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Bug 687316 - app-text/texlive-core-2019-r1 with dev-tex/latexmk - file collision at /usr/bin/latexmk
Summary: app-text/texlive-core-2019-r1 with dev-tex/latexmk - file collision at /usr/b...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexis Ballier
URL:
Whiteboard:
Keywords:
: 687320 (view as bug list)
Depends on:
Blocks:
 
Reported: 2019-06-04 01:13 UTC by Eugene Shalygin
Modified: 2019-06-04 14:49 UTC (History)
7 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Eugene Shalygin 2019-06-04 01:13:51 UTC
* package app-text/texlive-core-2019-r1 NOT merged
 * 
 * Detected file collision(s):
 * 
 *      /usr/bin/latexmk
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-tex/latexmk-456:0::gentoo
 *      /usr/bin/latexmk
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2019-06-04 06:57:26 UTC
*** Bug 687320 has been marked as a duplicate of this bug. ***
Comment 2 Nikos Chantziaras 2019-06-04 12:45:00 UTC
Same here. texlive-2017 is currently installed:

$ emerge --info app-text/texlive
Portage 2.3.67 (python 3.6.8-final-0, default/linux/amd64/17.0/desktop/plasma/systemd, gcc-8.3.0, glibc-2.29-r2, 4.19.47-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.19.47-gentoo-x86_64-Intel-R-_Core-TM-_i5-2500K_CPU_@_3.30GHz-with-gentoo-2.6
KiB Mem:    16394456 total,  10692860 free
KiB Swap:    4194300 total,   4194300 free
Timestamp of repository gentoo: Tue, 04 Jun 2019 12:05:19 +0000
Head commit of repository gentoo: 2aea77df73175fba63150e2fb80ea1ce18777590

Head commit of repository flatpak-overlay: fd4c72b2d0653ea1ae6a4e0562604f00ba3e1eef

Head commit of repository kwin-lowlatency-overlay: 40504bc2d2ca4904f61f19f39c550da9e47f9573

sh bash 5.0_p7
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          5.0_p7::gentoo
dev-lang/perl:            5.30.0::gentoo
dev-lang/python:          2.7.16::gentoo, 3.6.8::gentoo
dev-util/cmake:           3.14.5::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/sandbox:         2.17::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo
sys-devel/gcc:            8.3.0-r1::gentoo
sys-devel/gcc-config:     2.0::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.0-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r2::gentoo
Repositories:

gentoo
    location: /mnt/Data/gentoo/portage
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/repo/sync/gentoo.git
    priority: -1000
    sync-git-verify-commit-signature: true

abendbrot
    location: /var/lib/layman/abendbrot
    masters: gentoo
    priority: 50

flatpak-overlay
    location: /usr/local/flatpak-overlay
    sync-type: git
    sync-uri: https://github.com/fosero/flatpak-overlay.git
    masters: gentoo
    priority: 50

interactive-fiction
    location: /var/lib/layman/interactive-fiction
    masters: gentoo
    priority: 50

seden
    location: /var/lib/layman/seden
    masters: gentoo
    priority: 50

steam-overlay
    location: /var/lib/layman/steam-overlay
    masters: gentoo
    priority: 50

vapoursynth
    location: /var/lib/layman/vapoursynth
    masters: gentoo
    priority: 50

kwin-lowlatency-overlay
    location: /usr/local/kwin-lowlatency-overlay
    sync-type: git
    sync-uri: https://github.com/agates/kwin-lowlatency-overlay.git
    masters: gentoo
    priority: 9999

local
    location: /usr/local/portage
    masters: gentoo
    priority: 9999999

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-pipe -O2 -mtune=native -march=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer"
CXXFLAGS="-pipe -O2 -mtune=native -march=native -ftree-vectorize"
DISTDIR="/mnt/Data/gentoo/distfiles"
EMERGE_DEFAULT_OPTS="--backtrack=200"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-pipe -O2 -mtune=native -march=native -ftree-vectorize"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms sign strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-pipe -O2 -mtune=native -march=native -ftree-vectorize"
GENTOO_MIRRORS="http://ftp.ntua.gr/pub/linux/gentoo http://mirror.ovh.net/gentoo-distfiles http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en_US en"
MAKEOPTS="-j4"
PKGDIR="/mnt/Data/gentoo/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac accessibility acl acpi activities amd64 berkdb bzip2 cairo cli crypt cxx dbus declarative dri dts dvd dvdr emboss encode exif fam flac fortran gdbm gif glamor gpm gtk iconv ipv6 jpeg kde kipi kwallet lcms libnotify libtirpc linguas_en linguas_en_US lto mad mng mp3 mp4 mpeg multilib ncurses nptl nvidia offensive ogg opengl openmp pam pango pcre pdf pgo phonon plasma png policykit ppds pulseaudio qml qt5 readline seccomp spell ssl startup-notification svg systemd tcpd tiff truetype udev udisks unicode upower usb vdpau vorbis vulkan wayland widgets wxwidgets xattr xcb xcomposite xml xv xvid zlib" ABI_X86="64 32" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en-US en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby25" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

app-text/texlive-2017::gentoo was built with the following:
USE="X extra graphics png truetype xetex xml -cjk -context -detex -dvi2tty -epspdf -games -humanities -jadetex -luatex -metapost -music -pdfannotextractor -pstricks -publishers -science -tex4ht -texi2html -xindy" ABI_X86="(64)" L10N="en -af -ar -as -bg -bn -br -ca -cs -cy -da -de -el -eo -es -et -eu -fa -fi -fr -ga -gl -gu -he -hi -hr -hsb -hu -hy -ia -id -is -it -ja -kn -ko -la -lo -lt -lv -ml -mn -mr -nb -nl -nn -no -or -pa -pl -pt -rm -ro -ru -sa -sco -sk -sl -sq -sr -sv -ta -te -th -tk -tr -uk -vi -zh"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms sign strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -Wl,--sort-common"
Comment 3 Bernd Feige 2019-06-04 13:14:45 UTC
app-text/texlive-2019 depends upon >=dev-tex/latexmk-418, by removing that line from the ebuild the conflict is resolved.
Comment 4 Nikos Chantziaras 2019-06-04 14:11:51 UTC
(In reply to Bernd Feige from comment #3)
> app-text/texlive-2019 depends upon >=dev-tex/latexmk-418, by removing that
> line from the ebuild the conflict is resolved.

This allowed it to emerge. But then other texlive deps failed to emerge. One of them could be fixed through a "sudo texmf-update". But then another failed. I unmerged texlive and did a depclean, deleted /etc/texmf. No texlive packages were left on the system. I then tried to emerge texlive again hoping that a clean install would succeed where an upgrade failed. But then dev-texlive/texlive-latex failed to emerge with a "I can't find file `dehypht-x-2019-04-04.tex'" error which I don't know to fix.

It seems texlive 2019 is not installable at all in its current state. So I removed everything again and then tried to go back to texlive-2017. But it doesn't work. "emerge =texlive-2017" still wants to install 2019 packages.

So everything is borked right now.
Comment 5 Larry the Git Cow gentoo-dev 2019-06-04 14:17:47 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a8c2dc65be14bd19190f8beafbb31f566ca9496c

commit a8c2dc65be14bd19190f8beafbb31f566ca9496c
Author:     Mikle Kolyada <zlogene@gentoo.org>
AuthorDate: 2019-06-04 14:17:00 +0000
Commit:     Mikle Kolyada <zlogene@gentoo.org>
CommitDate: 2019-06-04 14:17:43 +0000

    app-text/texlive-core: unbundle latexmk
    
    Closes: https://bugs.gentoo.org/687316
    Signed-off-by: Mikle Kolyada <zlogene@gentoo.org>
    Package-Manager: Portage-2.3.66, Repoman-2.3.11

 app-text/texlive-core/Manifest                    |   1 +
 app-text/texlive-core/texlive-core-2019-r2.ebuild | 348 ++++++++++++++++++++++
 2 files changed, 349 insertions(+)