684798 – dev-python/matplotlib-2.2.2-r1 - numpydoc.docscrape.ParseError: .. note:: is not a item name in "Plot horizontal lines at each *y* from *xmin* to *xmax*.\n\nParameters\n----------\ny : scalar or sequence of scalar\n y-indexes where to plot the lines...

Bug 684798 - dev-python/matplotlib-2.2.2-r1 - numpydoc.docscrape.ParseError: .. note:: is not a item name in "Plot horizontal lines at each *y* from *xmin* to *xmax*.\n\nParameters\n----------\ny : scalar or sequence of scalar\n y-indexes where to plot the lines...

Summary: dev-python/matplotlib-2.2.2-r1 - numpydoc.docscrape.ParseError: .. note:: is ...

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal
Assignee:	Gentoo Science Related Packages

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2019-04-30 12:59 UTC by Juergen Rose
Modified:	2019-05-02 15:11 UTC (History)
CC List:	3 users (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
build.log (build.log,351.28 KB, text/plain) 2019-04-30 12:59 UTC, Juergen Rose	Details
output of 'emerge -pvuDN sphinx' (emerge_pvuDN_sphinx.txt,23.83 KB, text/plain) 2019-05-01 06:41 UTC, Juergen Rose	Details
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Description Juergen Rose 2019-04-30 12:59:12 UTC

Created attachment 574784 [details]
build.log

'MAKEOPTS=-j1 emerge -v1 matplotlib' with doc USE flag fails with:
...
reading sources... [ 11%] api/_as_gen/matplotlib.axes.Axes.hist2d                                                                                                                                       
reading sources... [ 11%] api/_as_gen/matplotlib.axes.Axes.hlines                                                                                                                                       
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/examples/api/power_norm.py:9: RuntimeWarning: covariance is not sym                                                     metric positive-semidefinite.                                                                                                                                                                           
                                                                                                                                                            
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/figure.py:2267: UserWarning: This figure inclu                                                     des Axes that are not compatible with tight_layout, so results might be incorrect.                                                                                                                      
  warnings.warn("This figure includes Axes that are not compatible "                                                                                                                                    
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/font_manager.py:1328: UserWarning: findfont: F                                                     ont family ['cursive'] not found. Falling back to DejaVu Sans                                                                                                                                           
  (prop.get_family(), self.defaultFamily[fontext]))                                                                                                                                                     
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/font_manager.py:1328: UserWarning: findfont: F                                                     ont family ['fantasy'] not found. Falling back to DejaVu Sans                                                                                                                                           
  (prop.get_family(), self.defaultFamily[fontext]))                                                                                                                                                     
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/pyplot.py:537: RuntimeWarning: More than 20 fi                                                     gures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may cons                                                     ume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).                                                                                                              
  max_open_warning, RuntimeWarning)                                                                                                                                                                     
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/font_manager.py:1328: UserWarning: findfont: F                                                     ont family ['xkcd', 'Humor Sans', 'Comic Sans MS'] not found. Falling back to DejaVu Sans                                                                                                               
  (prop.get_family(), self.defaultFamily[fontext]))
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/cbook/deprecation.py:107: MatplotlibDeprecationWarning: Adding an axes using the same arguments as a previous axes currently reuses the earlier instance.  In a future version, a new instance will always be created and returned.  Meanwhile, this warning can be suppressed, and the future behavior ensured, by passing a unique label to each axes instance.
  warnings.warn(message, mplDeprecation, stacklevel=1)
/usr/lib64/python3.6/site-packages/numpy/core/numeric.py:538: UserWarning: Warning: converting a masked element to nan.
  return array(a, dtype, copy=False, order=order)
/usr/lib64/python3.6/site-packages/numpy/ma/core.py:2788: UserWarning: Warning: converting a masked element to nan.
  order=order, subok=True, ndmin=ndmin)
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/figure.py:2223: UserWarning: Calling figure.constrained_layout, but figure not setup to do constrained layout.     You either called GridSpec without the fig keyword, you are using plt.subplot, or you need to call figure or subplotswith the constrained_layout=True kwarg.
  warnings.warn("Calling figure.constrained_layout, but figure "
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/gridspec.py:314: UserWarning: This figure includes Axes that are not compatible with tight_layout, so results might be incorrect.
  warnings.warn("This figure includes Axes that are not compatible "
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/figure.py:459: UserWarning: matplotlib is currently using a non-GUI backend, so cannot show the figure
  "matplotlib is currently using a non-GUI backend, "
/var/tmp/portage/dev-python/matplotlib-2.2.2-r1/work/matplotlib-2.2.2-python3_6/build/lib/matplotlib/font_manager.py:1328: UserWarning: findfont: Font family ['Times New Roman'] not found. Falling back to DejaVu Sans
  (prop.get_family(), self.defaultFamily[fontext]))

Exception occurred:
  File "/usr/lib64/python3.6/site-packages/numpydoc/docscrape.py", line 330, in _parse_see_also
    raise ParseError("%s is not a item name" % line)
numpydoc.docscrape.ParseError: .. note:: is not a item name in "Plot horizontal lines at each *y* from *xmin* to *xmax*.\n\nParameters\n----------\ny : scalar or sequence of scalar\n    y-indexes where to plot the lines.\n\nxmin, xmax : scalar or 1D array_like\n    Respective beginning and end of each line. If scalars are\n    provided, all lines will have same length.\n\ncolors : array_like of colors, optional, default: 'k'\n\nlinestyles : ['solid' | 'dashed' | 'dashdot' | 'dotted'], optional\n\nlabel : string, optional, default: ''\n\nReturns\n-------\nlines : `~matplotlib.collections.LineCollection`\n\nOther Parameters\n----------------\n**kwargs :  `~matplotlib.collections.LineCollection` properties.\n\nSee also\n--------\nvlines : vertical lines\naxhline: horizontal line across the axes\n\n.. note::\n    In addition to the above described arguments, this function can take a\n    **data** keyword argument. If such a **data** argument is given, the\n    following arguments are replaced by **data[<arg>]**:\n\n    * All arguments with the following names: 'colors', 'xmax', 'xmin', 'y'."



root@caiman:/var/log/journal/c1c7bb398f2200724f41da4d00000057(60)# emerge -pqv '=dev-python/matplotlib-2.2.2-r1::gentoo'
[ebuild   R   ] dev-python/matplotlib-2.2.2-r1  USE="cairo doc* examples excel gtk3 latex qt5 tk wxwidgets -gtk2 -test" PYTHON_TARGETS="python2_7 python3_6 -python3_5 -python3_7"

Comment 1 Juergen Rose 2019-04-30 13:01:21 UTC

root@caiman:/root(64)# emerge --info
Portage 2.3.66 (python 3.6.8-final-0, default/linux/amd64/17.0, gcc-8.3.0, glibc-2.29-r2, 5.0.9-gentoo x86_64)
=================================================================
System uname: Linux-5.0.9-gentoo-x86_64-AMD_Phenom-tm-_II_X6_1090T_Processor-with-gentoo-2.6
KiB Mem:    16166180 total,   3728568 free
KiB Swap:  100663280 total, 100405488 free
Timestamp of repository gentoo: Tue, 30 Apr 2019 09:00:01 +0000
Head commit of repository gentoo: ff0b706438d2f8b64c038db15eefbb04a814df07
sh bash 5.0_p7
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          5.0_p7::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.28.2::gentoo
dev-lang/python:          2.7.16::gentoo, 3.6.8::gentoo, 3.7.3::gentoo
dev-util/cmake:           3.11.4-r1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/sandbox:         2.17::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo
sys-devel/gcc:            8.3.0-r1::gentoo
sys-devel/gcc-config:     2.0::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.0-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r2::gentoo
Repositories:

gentoo
    location: /usr/portage_caiman
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

g-cpan
    location: /var/lib/cpan
    masters: gentoo
    priority: 1

g-octave
    location: /var/lib/g-octave
    masters: gentoo
    priority: 2

haskell
    location: /var/lib/layman/haskell
    masters: gentoo
    priority: 50

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

x11
    location: /var/lib/layman/x11
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=amdfam10 -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=amdfam10 -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de en fr ru"
MAKEOPTS="-j7"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="3dnow 3dnowext 64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile automap automount barcode bash-completion berkdb blas blast bluetooth bluray boost btrfs bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cilk clang cli cmake collada contrib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia digitalradio djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evdev evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse gcj gd gdal gdbm gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jadetex java jbig jit john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate libtirpc live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mng mod mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg opencl opencv openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds ppp preview-latex proj projectm pstricks pulseaudio python q16 q32 qemu qhull qml qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool sage samba sasl schroedinger science sdk sdl seccomp secure-delete server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite ssl stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tbb tcl tcpd tex tex4ht theora thesaurus threads thunderbird tidy tiff tk tools truetype udev udisks unicode usb utempter v4l v4l2 vaapi vala valgrind vdpau video vim-syntax virt-network virtualbox visio vorbis vpx vtk wav wayland webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xen xetex xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zsh-completion zvbi" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="3dnow 3dnowext mmx mmxext popcnt sse sse2 sse3 sse4a" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="emu efi-64 pc xen" INPUT_DEVICES="keyboard mouse evdev void" KERNEL="linux" L10N="de en fr ru" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LIRC_DEVICES="devinput" LLVM_TARGETS="AMDGPU X86" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="radeon displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

Comment 2 François Bissey 2019-04-30 22:47:05 UTC

Which version of sphinx are you using? 2.0.1?

Comment 3 Juergen Rose 2019-05-01 06:38:51 UTC

It is only sphinx-1.7.5-r1:

root@caiman:/root(69)# qlist -Iv sphinx                                                                                                                                    
dev-python/namespace-sphinxcontrib-1.0                                                                                                                                     
dev-python/sphinx-1.7.5-r1                                                                                                                                                 
dev-python/sphinx-bootstrap-theme-0.6.5                                                                                                                                    
dev-python/sphinxcontrib-websupport-1.1.0                                                                                                                                  
dev-python/sphinx-gallery-0.1.12                                                                                                                                           
dev-python/sphinx_rtd_theme-0.2.4 

The update to >= 2.0.1 seems to be blocked by several other python packages, see attachment.

Comment 4 Juergen Rose 2019-05-01 06:41:25 UTC

Created attachment 574880 [details]
output of 'emerge -pvuDN sphinx'

Comment 5 Juergen Rose 2019-05-02 05:38:57 UTC

After 'emerge --depclean' the subsequent 'emerge world' fails with:

root@caiman:/root(91)# emerge --update --newuse --deep --with-bdeps=y --backtrack=30 --keep-going --verbose-conflicts @world
Calculating dependencies... done!

!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:

dev-python/sphinx:0

  (dev-python/sphinx-2.0.1:0/0::gentoo, ebuild scheduled for merge) pulled in by
    >=dev-python/sphinx-2.0[python_targets_pypy3(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-qthelp-1.0.2:0/0::gentoo, ebuild scheduled for merge)
    ^^                  ^^^
    >=dev-python/sphinx-2.0[python_targets_pypy3(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-serializinghtml-1.1.3:0/0::gentoo, ebuild scheduled for merge)
    ^^                  ^^^
    >=dev-python/sphinx-2.0[python_targets_pypy3(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-devhelp-1.0.1:0/0::gentoo, ebuild scheduled for merge)
    ^^                  ^^^
    >=dev-python/sphinx-2.0[python_targets_pypy3(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-jsmath-1.0.1:0/0::gentoo, ebuild scheduled for merge)
    ^^                  ^^^
    >=dev-python/sphinx-2.0[python_targets_pypy3(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-applehelp-1.0.1:0/0::gentoo, ebuild scheduled for merge)
    ^^                  ^^^
    >=dev-python/sphinx-2.0[python_targets_pypy3(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-htmlhelp-1.0.2:0/0::gentoo, ebuild scheduled for merge)
    ^^                  ^^^

  (dev-python/sphinx-1.7.5-r1:0/0::gentoo, installed) pulled in by
    dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] required by (sys-devel/llvm-8.0.0:8/8::gentoo, installed)
    >=dev-python/sphinx-1.5.3[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/sphinxcontrib-websupport-1.1.0:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] required by (sci-chemistry/gromacs-2019.2:0/2019.2::gentoo, installed)

    >=dev-python/sphinx-1.1.3-r5[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] required by (media-libs/vigra-1.11.1-r2:0/0::gentoo, installed)

    >=dev-python/sphinx-1.3.1[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/recommonmark-0.5.0_pre20181012-r1:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)]
 required by (dev-python/pyasn1-0.4.3:0/0::gentoo, installed)
    
    dev-python/sphinx[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/paramiko-2.4.2:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/cffi-1.12.1:0/1.12.1::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/pillow-6.0.0:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/Babel-2.6.0:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/pep8-1.7.1:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/pyopenssl-19.0.0:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/pycodestyle-2.4.0:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/pygments-2.3.1:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/olefile-0.46:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/jinja-2.10.1:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/cython-0.29.7:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/testtools-2.3.0:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_pypy(-)?,python_targets_pypy3(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/urllib3-1.24.2:0/0::gentoo, installed)

    dev-python/sphinx[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-)] required by (dev-python/future-0.17.0:0/0::gentoo, installed)


It may be possible to solve this problem by using package.mask to
prevent one of those packages from being selected. However, it is also
possible that conflicting dependencies exist such that they are
impossible to satisfy simultaneously.  If such a conflict exists in
the dependencies of two different packages, then those packages can
not be installed simultaneously.

For more information, see MASKED PACKAGES section in the emerge man
page or refer to the Gentoo Handbook.


The following USE changes are necessary to proceed:
 (see "package.use" in the portage(5) man page for more details)
# required by dev-python/ipython-7.5.0::gentoo[matplotlib]
# required by dev-python/rpy-2.9.0::gentoo
# required by @selected
# required by @world (argument)
>=dev-python/matplotlib-2.2.2-r1 -python_targets_python2_7

Use --autounmask-write to write changes to config files (honoring
CONFIG_PROTECT). Carefully examine the list of proposed changes,
paying special attention to mask or keyword changes that may expose
experimental or unstable packages.

!!! The ebuild selected to satisfy "dev-python/matplotlib[python_targets_python3_5(-)?,python_targets_python3_6(-)?,python_targets_python3_7(-)?,-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_targets_python2_7]" has unmet requirements.
- dev-python/matplotlib-2.2.2-r1::gentoo USE="cairo examples excel gtk3 latex qt5 tk wxwidgets -doc -gtk2 -test" ABI_X86="(64)" PYTHON_TARGETS="python2_7 python3_6 -python3_5 -python3_7"

  The following REQUIRED_USE flag constraints are unsatisfied:
    excel? ( python_targets_python2_7 ) wxwidgets? ( python_targets_python2_7 )

  The above constraints are a subset of the following complete expression:
    doc? ( any-of ( python_targets_python2_7 ) ) excel? ( any-of ( python_targets_python2_7 ) ) gtk2? ( any-of ( python_targets_python2_7 ) ) wxwidgets? ( any-of ( python_targets_python2_7 ) ) test? ( cairo latex qt5 tk wxwidgets any-of ( gtk2 gtk3 ) ) any-of ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 python_targets_python3_7 )

(dependency required by "dev-python/ipython-7.5.0::gentoo" [ebuild])
(dependency required by "dev-python/rpy-2.9.0::gentoo" [installed])
(dependency required by "@selected" [set])
(dependency required by "@world" [argument])

Comment 6 Larry the Git Cow gentoo-dev

2019-05-02 15:11:28 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3017cf5138cdd90bda307ad0e820e5890350738a

commit 3017cf5138cdd90bda307ad0e820e5890350738a
Author:     Virgil Dupras <vdupras@gentoo.org>
AuthorDate: 2019-05-02 15:10:35 +0000
Commit:     Virgil Dupras <vdupras@gentoo.org>
CommitDate: 2019-05-02 15:10:35 +0000

    dev-python/matplotlib: bump to 2.2.4
    
    Closes: https://bugs.gentoo.org/684798
    Closes: https://bugs.gentoo.org/656262
    Signed-off-by: Virgil Dupras <vdupras@gentoo.org>
    Package-Manager: Portage-2.3.62, Repoman-2.3.11

 dev-python/matplotlib/Manifest                     |   1 +
 .../files/matplotlib-2.2.4-doc-fix.patch           |  18 ++
 .../matplotlib-2.2.4-no-jqueryui-download.patch    |  18 ++
 dev-python/matplotlib/matplotlib-2.2.4.ebuild      | 258 +++++++++++++++++++++
 4 files changed, 295 insertions(+)