Created attachment 571584 [details] build.log from config.log: configure:17081: x86_64-pc-linux-gnu-g++ -c -O2 -pipe -O2 -pipe -march=native -std=c++14 -I/usr/include conftest.cpp >&5 In file included from /local/tmp/huber/prefix/usr/lib/gcc/x86_64-pc-linux-gnu/8.3.0/include/g++-v8/cstdlib:75, from /usr/include/boost/config/platform/linux.hpp:15, from /usr/include/boost/config.hpp:57, from /usr/include/boost/regex/config.hpp:44, from /usr/include/boost/regex.hpp:28, from conftest.cpp:37: /local/tmp/huber/prefix/usr/include/stdlib.h:133:35: error: missing binary operator before token "(" #if __HAVE_FLOAT16 && __GLIBC_USE (IEC_60559_TYPES_EXT) ^ and more ... $ emerge --info dev-util/source-highlight Portage 2.3.62 (python 3.6.8-final-0, default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+, gcc-8.3.0, glibc-2.29-r1, 4.4.175-89-default x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.4.175-89-default-x86_64-Intel-R-_Core-TM-_i5-6500_CPU_@_3.20GHz-with-SuSE-42.3-x86_64 KiB Mem: 8053020 total, 521384 free KiB Swap: 8384508 total, 2314068 free Timestamp of repository gentoo: Tue, 02 Apr 2019 10:30:01 +0000 Head commit of repository gentoo: fbbf0180defffddc985889ba006773edcebc0271 Timestamp of repository science: Tue, 02 Apr 2019 01:43:47 +0000 Head commit of repository science: 05a38342bf34bd0501aa5b5f20febbfd997172bf sh bash 4.4_p23 ld GNU ld (Gentoo 2.31.1 p5) 2.31.1 app-shells/bash: 4.4_p23::gentoo dev-lang/perl: 5.28.0::gentoo dev-lang/python: 2.7.15::gentoo, 3.6.8::gentoo, 3.7.3::gentoo dev-util/cmake: 3.14.1::localrepo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/sandbox: 2.17::gentoo sys-devel/autoconf: 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.31.1-r3::gentoo, 2.32::gentoo sys-devel/gcc: 8.2.0-r5::gentoo, 8.3.0::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.0-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r1::gentoo Repositories: gentoo location: /scratch/huber/usr_portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: no sync-rsync-verify-jobs: 1 sync-rsync-extra-opts: localrepo location: /local/tmp/huber/prefix/usr/local/portage masters: gentoo science location: /local/tmp/huber/prefix/var/db/repos/science sync-type: git sync-uri: https://github.com/gentoo-mirror/science.git masters: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /local/tmp/huber/prefix/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /local/tmp/huber/prefix/etc/env.d /local/tmp/huber/prefix/etc/gentoo-release" CXXFLAGS="-O2 -pipe -O2 -pipe -march=native" DISTDIR="/local/tmp/huber/prefix/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sfperms strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged xattr" FFLAGS="-O2 -pipe -O2 -pipe -march=native" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf-8" LC_ALL="en_US.utf-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/local/tmp/huber/prefix/usr/portage/packages" PORTAGE_CONFIGROOT="/local/tmp/huber/prefix/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/dev/shm/" USE="acl amd64 berkdb bzip2 caps cli crypt cxx dri fortran gdbm iconv ipv6 jpeg lapack latex libtirpc lz4 lzma metis ncurses nls nptl openmp pcre pdf png prefix python readline seccomp sqlite ssl stunnel tcpd threads tiff tools unicode utils vim-syntax webp xattr xkb zlib zstd" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="BPF X86 WebAssembly" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6 python3_7" QEMU_USER_TARGETS="x86_64" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
hmmm, I built this today just fine (gdb, eh?), so it probably has to do with your glibc version. Which is seriously odd, since RAP is supposed to provide that one, so you shouldn't be the only one.
(In reply to Fabian Groffen from comment #1) > hmmm, I built this today just fine (gdb, eh?), so it probably has to do with > your glibc version. Which is seriously odd, since RAP is supposed to > provide that one, so you shouldn't be the only one. For me, the main issue is that during configure, the boost from the HOST is used, rather than the PREFIX. Sorry it wasn't super clear in my report.
there's -I/usr/include in your post, so yeah, it seems to pick up wrong stuff
Bumping EAPI to 7 and adding --with-boost="${ESYSROOT}"/usr \ to the econf call enables me to build it My understanding is that in the package provided ax_boost_base.m4, whenever no path is given to --with-boost, it looks into some hard-coded paths. If a path is provided to --with-boost, then it gets searched first. That's how BOOST_CPPFLAGS ends up being set to "/usr/include" and passed to the compiler. Actually even passing a garbage value as argument to --with-boost ends up solving the issue. Note that in my system-wide ax_boost_base.m4 file, there is the same issue: === AS_IF([test "x$_AX_BOOST_BASE_boost_path" != "x"],[ AC_MSG_CHECKING([for boostlib >= $1 ($WANT_BOOST_VERSION) includes in "$_AX_BOOST_BASE_boost_path/include"]) AS_IF([test -d "$_AX_BOOST_BASE_boost_path/include" && test -r "$_AX_BOOST_BASE_boost_path/include"],[ AC_MSG_RESULT([yes]) BOOST_CPPFLAGS="-I$_AX_BOOST_BASE_boost_path/include" for _AX_BOOST_BASE_boost_path_tmp in $multiarch_libsubdir $libsubdirs; do AC_MSG_CHECKING([for boostlib >= $1 ($WANT_BOOST_VERSION) lib path in "$_AX_BOOST_BASE_boost_path/$_AX_BOOST_BASE_boost_path_tmp"]) AS_IF([test -d "$_AX_BOOST_BASE_boost_path/$_AX_BOOST_BASE_boost_path_tmp" && test -r "$_AX_BOOST_BASE_boost_path/$_AX_BOOST_BASE_boost_path_tmp" ],[ AC_MSG_RESULT([yes]) BOOST_LDFLAGS="-L$_AX_BOOST_BASE_boost_path/$_AX_BOOST_BASE_boost_path_tmp"; break; ], [AC_MSG_RESULT([no])]) done],[ AC_MSG_RESULT([no])]) ],[ if test X"$cross_compiling" = Xyes; then search_libsubdirs=$multiarch_libsubdir else search_libsubdirs="$multiarch_libsubdir $libsubdirs" fi for _AX_BOOST_BASE_boost_path_tmp in /usr /usr/local /opt /opt/local ; do if test -d "$_AX_BOOST_BASE_boost_path_tmp/include/boost" && test -r "$_AX_BOOST_BASE_boost_path_tmp/include/boost" ; then for libsubdir in $search_libsubdirs ; do if ls "$_AX_BOOST_BASE_boost_path_tmp/$libsubdir/libboost_"* >/dev/null 2>&1 ; then break; fi done BOOST_LDFLAGS="-L$_AX_BOOST_BASE_boost_path_tmp/$libsubdir" BOOST_CPPFLAGS="-I$_AX_BOOST_BASE_boost_path_tmp/include" break; fi done ]) === Hence, whenever no path is given to --with-boost, "/usr /usr/local /opt /opt/local" gets searched for a include/boost , and used if successful. Hence, all packages using autotools and depending on boost will have some potential issue, unless --with-boost is given an argument.
ACK, a fix like that is indeed the way to go
(In reply to Olivier Huber from comment #4) > Bumping EAPI to 7 and adding > --with-boost="${ESYSROOT}"/usr \ > to the econf call enables me to build it Although not sure about cross compiling - which you don't seem to use, EAPI 7 doesn't feel necessary, as this most likely should read --with-boost="${EPREFIX}"/usr which should work for any EAPI, including EAPI 7.
(In reply to Michael Haubenwallner from comment #6) > (In reply to Olivier Huber from comment #4) > > Bumping EAPI to 7 and adding > > --with-boost="${ESYSROOT}"/usr \ > > to the econf call enables me to build it > > Although not sure about cross compiling - which you don't seem to use, > EAPI 7 doesn't feel necessary, as this most likely should read > --with-boost="${EPREFIX}"/usr > which should work for any EAPI, including EAPI 7. I'm not crosscompiling, I just thought that this would be the more general fix, and would with non negligible probability cover the XC case :) For this particular package, I'm unsure whether supporting XC is relevant ... I am fine with both options.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8469a591901645a4be35330c24b9a802cc2a40d4 commit 8469a591901645a4be35330c24b9a802cc2a40d4 Author: Fabian Groffen <grobian@gentoo.org> AuthorDate: 2019-04-09 09:48:10 +0000 Commit: Fabian Groffen <grobian@gentoo.org> CommitDate: 2019-04-09 09:48:10 +0000 dev-util/source-highlight: fix build for Prefix, thanks Olivier Huber Closes: https://bugs.gentoo.org/682330 Signed-off-by: Fabian Groffen <grobian@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 dev-util/source-highlight/source-highlight-3.1.8.ebuild | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-)
