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Bug 678314 - sci-chemistry/gromacs-2019.1 : CMake Error at cmake/gmxManageLmfit.cmake:79 (message):
Summary: sci-chemistry/gromacs-2019.1 : CMake Error at cmake/gmxManageLmfit.cmake:79 (...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-02-18 18:12 UTC by Toralf Förster
Modified: 2019-02-18 21:04 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.23 KB, text/plain)
2019-02-18 18:12 UTC, Toralf Förster
Details
CMakeError.log (CMakeError.log,14.56 KB, text/plain)
2019-02-18 18:12 UTC, Toralf Förster
Details
CMakeOutput.log (CMakeOutput.log,114.34 KB, text/plain)
2019-02-18 18:12 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,181.69 KB, text/plain)
2019-02-18 18:12 UTC, Toralf Förster
Details
environment (environment,164.07 KB, text/plain)
2019-02-18 18:12 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,15.49 KB, application/x-bzip)
2019-02-18 18:12 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,11.86 KB, application/x-bzip)
2019-02-18 18:12 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2019.1:20190218-131245.log (sci-chemistry:gromacs-2019.1:20190218-131245.log,13.05 KB, text/plain)
2019-02-18 18:12 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,38.56 KB, application/x-bzip)
2019-02-18 18:12 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2019-02-18 18:12:21 UTC
-- Performing Test LMFIT_LINKS_OK - Success
-- Found lmfit: /usr/include  
CMake Error at cmake/gmxManageLmfit.cmake:79 (message):
  External lmfit >= 7.0 could not be found, please adjust your pkg-config
  path to include the lmfit.pc file
Call Stack (most recent call first):

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_libressl_20190215-071609

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-8.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.6
  [3]   python2.7 (fallback)
  [4]   pypy3 (fallback)
  [5]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems)
  [3]   ruby26 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.32.0 *
  [2]   rust-bin-1.32.0



emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2019.1  USE="doc fftw gmxapi hwloc lmfit offensive openmp single-precision threads tng -X -blas -cuda -double-precision -lapack -mkl -mpi -opencl -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_TARGETS="python2_7"
Comment 1 Toralf Förster gentoo-dev 2019-02-18 18:12:24 UTC
Created attachment 565748 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-02-18 18:12:27 UTC
Created attachment 565750 [details]
CMakeError.log
Comment 3 Toralf Förster gentoo-dev 2019-02-18 18:12:30 UTC
Created attachment 565752 [details]
CMakeOutput.log
Comment 4 Toralf Förster gentoo-dev 2019-02-18 18:12:32 UTC
Created attachment 565754 [details]
emerge-history.txt
Comment 5 Toralf Förster gentoo-dev 2019-02-18 18:12:35 UTC
Created attachment 565756 [details]
environment
Comment 6 Toralf Förster gentoo-dev 2019-02-18 18:12:38 UTC
Created attachment 565758 [details]
etc.portage.tbz2
Comment 7 Toralf Förster gentoo-dev 2019-02-18 18:12:40 UTC
Created attachment 565760 [details]
logs.tbz2
Comment 8 Toralf Förster gentoo-dev 2019-02-18 18:12:43 UTC
Created attachment 565762 [details]
sci-chemistry:gromacs-2019.1:20190218-131245.log
Comment 9 Toralf Förster gentoo-dev 2019-02-18 18:12:46 UTC
Created attachment 565764 [details]
temp.tbz2
Comment 10 Larry the Git Cow gentoo-dev 2019-02-18 21:04:13 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6f2625267306589c6d19cad67132ea280e8dfb57

commit 6f2625267306589c6d19cad67132ea280e8dfb57
Author:     Alexey Shvetsov <alexxy@gentoo.org>
AuthorDate: 2019-02-18 21:00:10 +0000
Commit:     Alexey Shvetsov <alexxy@gentoo.org>
CommitDate: 2019-02-18 21:03:45 +0000

    sci-libs/lmfit: Version bump
    
    Closes: https://bugs.gentoo.org/678314
    Package-Manager: Portage-2.3.60, Repoman-2.3.12
    Signed-off-by: Alexey Shvetsov <alexxy@gentoo.org>

 sci-libs/lmfit/Manifest                      |  1 +
 sci-libs/lmfit/files/lmfit-8.2.2-cmake.patch | 85 ++++++++++++++++++++++++++++
 sci-libs/lmfit/lmfit-8.2.2.ebuild            | 25 ++++++++
 3 files changed, 111 insertions(+)