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Bug 669522 - sci-chemistry/votca-csg-1.4.1 : /.../gmxtopologyreader.cc:62:35: error: struct gmx_mtop_t has no member named nmolblock
Summary: sci-chemistry/votca-csg-1.4.1 : /.../gmxtopologyreader.cc:62:35: error: struc...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Christoph Junghans (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-10-24 17:29 UTC by Toralf Förster
Modified: 2018-11-24 23:44 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.82 KB, text/plain)
2018-10-24 17:29 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,268.97 KB, text/plain)
2018-10-24 17:29 UTC, Toralf Förster
Details
environment (environment,111.47 KB, text/plain)
2018-10-24 17:29 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,20.62 KB, application/x-bzip)
2018-10-24 17:29 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,5.52 KB, application/x-bzip)
2018-10-24 17:29 UTC, Toralf Förster
Details
sci-chemistry:votca-csg-1.4.1:20181024-043539.log (sci-chemistry:votca-csg-1.4.1:20181024-043539.log,25.22 KB, text/plain)
2018-10-24 17:29 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,29.10 KB, application/x-bzip)
2018-10-24 17:29 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,17.63 KB, text/plain)
2018-11-24 21:56 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,288.82 KB, text/plain)
2018-11-24 21:56 UTC, Toralf Förster
Details
environment (environment,113.14 KB, text/plain)
2018-11-24 21:56 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,19.78 KB, application/x-bzip)
2018-11-24 21:56 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,5.52 KB, application/x-bzip)
2018-11-24 21:56 UTC, Toralf Förster
Details
sci-chemistry:votca-csg-1.4.1:20181124-215055.log (sci-chemistry:votca-csg-1.4.1:20181124-215055.log,25.25 KB, text/plain)
2018-11-24 21:56 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,29.59 KB, application/x-bzip)
2018-11-24 21:56 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2018-10-24 17:29:29 UTC
/var/tmp/portage/sci-chemistry/votca-csg-1.4.1/work/csg-1.4.1/src/libcsg/modules/io/gmxtopologyreader.cc: In member function ‘virtual bool votca::csg::GMXTopologyReader::ReadTopology(std::__cxx11::string, votca::csg::Topology&)’:
/var/tmp/portage/sci-chemistry/votca-csg-1.4.1/work/csg-1.4.1/src/libcsg/modules/io/gmxtopologyreader.cc:62:35: error: ‘struct gmx_mtop_t’ has no member named ‘nmolblock’; did you mean ‘molblock’?
     for(int iblock=0; iblock<mtop.nmolblock; ++iblock)
                                   ^~~~~~~~~
                                   molblock

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_libressl-abi32+64_20181018-210907

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-8.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.6
  [3]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby23 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
java-config:
The following VMs are available for generation-2:


emerge -qpvO sci-chemistry/votca-csg
[ebuild   R   ] sci-chemistry/votca-csg-1.4.1  USE="gromacs -doc -examples -extras -hdf5"
Comment 1 Toralf Förster gentoo-dev 2018-10-24 17:29:32 UTC
Created attachment 552734 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2018-10-24 17:29:35 UTC
Created attachment 552736 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2018-10-24 17:29:37 UTC
Created attachment 552738 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2018-10-24 17:29:40 UTC
Created attachment 552740 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2018-10-24 17:29:43 UTC
Created attachment 552742 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2018-10-24 17:29:45 UTC
Created attachment 552744 [details]
sci-chemistry:votca-csg-1.4.1:20181024-043539.log
Comment 7 Toralf Förster gentoo-dev 2018-10-24 17:29:48 UTC
Created attachment 552746 [details]
temp.tbz2
Comment 8 Larry the Git Cow gentoo-dev 2018-10-25 00:44:10 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5e5649db98ca32bcc6a46a8623d365981fd076fb

commit 5e5649db98ca32bcc6a46a8623d365981fd076fb
Author:     Christoph Junghans <junghans@gentoo.org>
AuthorDate: 2018-10-25 00:43:11 +0000
Commit:     Christoph Junghans <junghans@gentoo.org>
CommitDate: 2018-10-25 00:43:58 +0000

    sci-chemistry/votca-csg: 1.4.1 doesn't support gmx-2019
    
    Package-Manager: Portage-2.3.49, Repoman-2.3.11
    Signed-off-by: Christoph Junghans <junghans@gentoo.org>
    Closes: https://bugs.gentoo.org/669522

 sci-chemistry/votca-csg/votca-csg-1.4.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)
Comment 9 Toralf Förster gentoo-dev 2018-11-24 21:56:26 UTC
got at the unstable amd64 chroot image 17.0_libressl_20181118-211953 this : /.../gmxtopologyreader.cc:62:35: error: struct gmx_mtop_t has no member named nmolblock
Comment 10 Toralf Förster gentoo-dev 2018-11-24 21:56:29 UTC
Created attachment 556132 [details]
emerge-info.txt
Comment 11 Toralf Förster gentoo-dev 2018-11-24 21:56:32 UTC
Created attachment 556134 [details]
emerge-history.txt
Comment 12 Toralf Förster gentoo-dev 2018-11-24 21:56:34 UTC
Created attachment 556136 [details]
environment
Comment 13 Toralf Förster gentoo-dev 2018-11-24 21:56:37 UTC
Created attachment 556138 [details]
etc.portage.tbz2
Comment 14 Toralf Förster gentoo-dev 2018-11-24 21:56:40 UTC
Created attachment 556140 [details]
logs.tbz2
Comment 15 Toralf Förster gentoo-dev 2018-11-24 21:56:43 UTC
Created attachment 556142 [details]
sci-chemistry:votca-csg-1.4.1:20181124-215055.log
Comment 16 Toralf Förster gentoo-dev 2018-11-24 21:56:46 UTC
Created attachment 556144 [details]
temp.tbz2
Comment 17 Larry the Git Cow gentoo-dev 2018-11-24 23:44:40 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8da2f3ea29aebabf8a92a50a9509b7f091f5f5a8

commit 8da2f3ea29aebabf8a92a50a9509b7f091f5f5a8
Author:     Christoph Junghans <junghans@gentoo.org>
AuthorDate: 2018-10-25 00:43:11 +0000
Commit:     Christoph Junghans <junghans@gentoo.org>
CommitDate: 2018-11-24 23:44:31 +0000

    sci-chemistry/votca-csg: 1.4.1 doesn't support gmx-2019_beta
    
    Package-Manager: Portage-2.3.49, Repoman-2.3.11
    Closes: https://bugs.gentoo.org/669522
    Signed-off-by: Christoph Junghans <junghans@gentoo.org>

 sci-chemistry/votca-csg/votca-csg-1.4.1.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)