Bug 668144 – sci-libs/mumps-5.1.2: parmetis.h:96:40: error: conflicting types for 'ParMETIS_V3_NodeND'

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Helmut Jarausch 2018-10-09 09:30:21 UTC]

The ebuild needs the following patch


--- /usr/portage/sci-libs/mumps/mumps-5.1.2.ebuild      2018-10-08 20:09:33.000000000 +0200
+++ /usr/local/portage/sci-libs/mumps/mumps-5.1.2.ebuild        2018-10-09 11:12:53.389016133 +0200
@@ -78,7 +78,7 @@
                        -e "s:#\s*\(IMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --cflags parmetis):" \
                        Makefile.inc || die
                LIBADD="${LIBADD} $($(tc-getPKG_CONFIG) --libs parmetis)"
-               ord="${ord} -Dparmetis"
+               ord="${ord} -Dparmetis3"
        elif use metis; then
                sed -i \
                        -e "s:#\s*\(LMETIS\s*=\).*:\1$($(tc-getPKG_CONFIG) --libs metis):" \


================

Compiling mumps-5.1.2 with the ebuild in the tree fails with
mpicc -march=native -O2  -maes -mavx -mavx2 -mf16c -mfma -mmmx -mpopcnt -msse -msse2 -msse3 -msse4.1 -msse4.2 -msse4a -mssse3 -pipe -fPIC  -I../include -DAdd_ -I/usr/include/metis -I../PORD/include/ -I/usr/include/scotch -Dpord -Dparmetis -Dptscotch -c mumps_metis.c -o mumps_metis.o
In file included from mumps_metis.c:26:
/usr/include/scotch/parmetis.h:96:40: error: conflicting types for 'ParMETIS_V3_NodeND'
 void                        METISNAMEU(ParMETIS_V3_NodeND) (const int * const, int * const, int * const, const int * const, const int * const, int * const, int * const, MPI_Comm * const);
                                        ^~~~~~~~~~~~~~~~~~
/usr/include/scotch/parmetis.h:89:40: note: in definition of macro 'METISNAME4'
 #define METISNAME4(p,s)             p##s
                                        ^
/usr/include/scotch/parmetis.h:86:37: note: in expansion of macro 'METISNAME2'
 #define METISNAMEU(s)               METISNAME2(METISNAME3(SCOTCH_METIS_PREFIXU),s)
                                     ^~~~~~~~~~
/usr/include/scotch/parmetis.h:96:29: note: in expansion of macro 'METISNAMEU'
 void                        METISNAMEU(ParMETIS_V3_NodeND) (const int * const, int * const, int * const, const int * const, const int * const, int * const, int * const, MPI_Comm * const);
                             ^~~~~~~~~~
In file included from /usr/include/metis/metis.h:25,
                 from mumps_metis.c:25:
/usr/include/metis/../parmetis.h:87:14: note: previous declaration of 'ParMETIS_V3_NodeND' was here
 void __cdecl ParMETIS_V3_NodeND(
              ^~~~~~~~~~~~~~~~~~

Looking at the source, the flags parametis has to be replaced by parametis3

[Comment 1 Dominik Kriegner 2018-10-18 09:02:18 UTC]

I can confirm this issue and also that the proposed fix works

[Comment 2 Matthias Maier 2018-11-26 00:34:31 UTC]

Alternatively, let's just use modern metis...

[Comment 3 Larry the Git Cow 2018-11-26 00:36:49 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=418b4a50e26dcc6a5a57c33bc2efb0ae4880e7d1

commit 418b4a50e26dcc6a5a57c33bc2efb0ae4880e7d1
Author:     Matthias Maier <[e-mail]>
AuthorDate: 2018-11-26 00:34:59 +0000
Commit:     Matthias Maier <[e-mail]>
CommitDate: 2018-11-26 00:34:59 +0000

    sci-libs/mumps: update metis dependencies (again)
    
    Closes: https://bugs.gentoo.org/668144
    Package-Manager: Portage-2.3.52, Repoman-2.3.12
    Signed-off-by: Matthias Maier <[e-mail]>

 sci-libs/mumps/mumps-5.1.2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)