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Bug 667828 - =sci-libs/lapack-reference-3.2.1-r4: configure: error: Cannot find blas libraries
Summary: =sci-libs/lapack-reference-3.2.1-r4: configure: error: Cannot find blas libra...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-10-05 16:24 UTC by Daniel M. Weeks
Modified: 2020-11-15 14:51 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
config.log (config.log,57.49 KB, text/x-log)
2018-10-05 16:25 UTC, Daniel M. Weeks
Details

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Description Daniel M. Weeks 2018-10-05 16:24:02 UTC
Portage 2.3.49 (python 3.6.5-final-0, default/linux/amd64/17.0, gcc-8.2.0, glibc-2.26-r7, 4.14.65-gentoo x86_64)
=================================================================
System uname: Linux-4.14.65-gentoo-x86_64-QEMU_Virtual_CPU_version_2.5+-with-gentoo-2.4.1
KiB Mem:    10240544 total,    622488 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Fri, 05 Oct 2018 13:44:38 +0000
Head commit of repository dev-overlay: d3162f5f3d7c808d32a7f0d43b48968edeb33986

Head commit of repository junkdrawer: ab730e028aca0207d59ca520452f733120b3d9fa

sh bash 4.4_p12
ld GNU ld (Gentoo 2.30 p5) 2.30.0
app-shells/bash:          4.4_p12::gentoo
dev-lang/perl:            5.24.3-r1::gentoo
dev-lang/python:          2.7.15::gentoo, 3.6.5::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.38.2::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.69-r4::gentoo
sys-devel/automake:       1.15.1-r2::gentoo
sys-devel/binutils:       2.30-r4::gentoo
sys-devel/gcc:            8.2.0-r3::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.26-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: no
    sync-rsync-verify-jobs: 1

dev-overlay
    location: /var/lib/layman/dev
    sync-type: git
    sync-uri: git://dev.danweeks.net/dev-overlay.git
    masters: gentoo
    priority: 50

junkdrawer
    location: /var/lib/layman/junkdrawer
    sync-type: git
    sync-uri: git://git.danweeks.net/junkdrawer-overlay.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -msse -msse2 -msse3 -mmmx -mpopcnt -mcx16 -mfxsr -msahf -mavx -mxsave -mpclmul"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -msse -msse2 -msse3 -mmmx -mpopcnt -mcx16 -mfxsr -msahf -mavx -mxsave -mpclmul"
DISTDIR="/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--binpkg-respect-use=y --binpkg-changed-deps=y --buildpkg-exclude 'virtual/* www-client/firefox-bin www-apps/grafana-bin net-dns/dnssec-root app-emulation/virtualbox-extpack-oracle app-emulation/virtualbox-additions sys-apps/baselayout dev-libs/cudnn dev-java/oracle-jre-bin dev-java/oracle-jdk-bin sys-kernel/gentoo-sources'"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs binpkg-multi-instance compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PKGDIR="/mnt/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 caps cli crypt cxx dri fortran gdbm gmp iconv ipv6 libtirpc logrotate modules multilib ncurses nls nptl openmp pam pcre readline seccomp ssl syslog tcpd threads unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx f16c mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="X86" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python3_6" RUBY_TARGETS="ruby23" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, MAKEOPTS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

Reproducible: Always
Comment 1 Daniel M. Weeks 2018-10-05 16:25:45 UTC
Created attachment 549452 [details]
config.log
Comment 2 Daniel M. Weeks 2018-10-05 18:01:35 UTC
This is the same problem as bug # 638424 with different so versions (4 -> 5 rather than 3 -> 4).

There needs to be better dependency support to handle things linked against gfortan or this is going to keep happening, especially with binary packages.
Comment 3 Larry the Git Cow gentoo-dev 2020-11-15 14:51:56 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=74ebcf45ffd328bbb7a7bb659f0be3f94a38cc4f

commit 74ebcf45ffd328bbb7a7bb659f0be3f94a38cc4f
Author:     Aisha Tammy <gentoo@aisha.cc>
AuthorDate: 2020-11-15 14:51:37 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-11-15 14:51:37 +0000

    sci-libs/lapack: remove lapacke-reference blocker
    
    * included in sci-libs/lapack
    
    Closes: https://bugs.gentoo.org/746962
    Closes: https://bugs.gentoo.org/684400
    Closes: https://bugs.gentoo.org/667828
    Closes: https://bugs.gentoo.org/666627
    Closes: https://bugs.gentoo.org/659016
    Closes: https://bugs.gentoo.org/689084
    Closes: https://bugs.gentoo.org/612038
    Closes: https://bugs.gentoo.org/620328
    Closes: https://bugs.gentoo.org/608270
    Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-libs/lapack/lapack-3.8.0-r1.ebuild | 1 -
 sci-libs/lapack/lapack-3.8.0.ebuild    | 1 -
 sci-libs/lapack/lapack-3.9.0.ebuild    | 1 -
 3 files changed, 3 deletions(-)