from pairwise_aligners/PerfectAlignerLG.cc:11: ./kmers/KmerShape.h: In static member function ‘static KmerShapeId kmer_shape_zebra<K>::getId()’: ./kmers/KmerShape.h:566:49: error: could not convert ‘kmer_shape_zebra<K>::getStringId()’ from ‘String’ {aka ‘FeudalString<char>’} to ‘KmerShapeId’ static KmerShapeId getId() { return getStringId(); } ~~~~~~~~~~~^~ make[2]: *** [Makefile:1653: PerfectAlignerLG.o] Error 1 ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0-desktop_libressl_20180820-195837 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-7.3.1 [2] x86_64-pc-linux-gnu-8.2.0 * Available Python interpreters, in order of preference: [1] python3.7 [2] python3.6 [3] python2.7 (fallback) Available Ruby profiles: [1] ruby23 (with Rubygems) [2] ruby25 (with Rubygems) * java-config: The following VMs are available for generation-2: *) IcedTea JDK 3.8.0 [icedtea-8] 2) IcedTea JDK 3.8.0 [icedtea-bin-8] Available Java Virtual Machines: [1] icedtea-8 system-vm [2] icedtea-bin-8 emerge -qpv sci-biology/vaal [ebuild N ] sci-biology/vaal-46233-r2 USE="openmp"
Created attachment 545198 [details] emerge-info.txt
Created attachment 545200 [details] emerge-history.txt
Created attachment 545202 [details] environment
Created attachment 545204 [details] etc.portage.tbz2
Created attachment 545206 [details] logs.tbz2
Created attachment 545208 [details] sci-biology:vaal-46233-r2:20180827-080342.log
Created attachment 545210 [details] temp.tbz2
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c8b947e648fdb093108496df8f8dfe5468ec0630 commit c8b947e648fdb093108496df8f8dfe5468ec0630 Author: David Seifert <soap@gentoo.org> AuthorDate: 2019-06-22 10:05:04 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2019-06-22 10:05:04 +0000 package.mask: Last rite sci-biology/vaal Bug: https://bugs.gentoo.org/664700 Bug: https://bugs.gentoo.org/685980 Signed-off-by: David Seifert <soap@gentoo.org> profiles/package.mask | 7 +++++++ 1 file changed, 7 insertions(+)
Gone.
