Created attachment 542906 [details] build.log.bz2 'MAKEOPTS=-j1 emerge -v1 gdal' fails with: ... "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- GDAL.bs blib/arch/auto/Geo/GDAL/GDAL.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree * ACCESS DENIED: mkdir: /usr/lib/perl5/x86_64-linux-thread-multi !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! ERROR: Can't create '/usr/lib/perl5/x86_64-linux-thread-multi/Geo' mkdir /usr/lib/perl5/x86_64-linux-thread-multi: Permission denied at /usr/lib64/perl5/5.26.2/ExtUtils/Install.pm line 477. !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! at -e line 1. make[1]: *** [Makefile_Geo__GDAL:810: pure_site_install] Error 13 make[1]: Leaving directory '/var/tmp/portage/sci-libs/gdal-2.3.1/work/gdal-2.3.1/swig/perl' make: *** [GNUmakefile:39: install] Error 2 * ERROR: sci-libs/gdal-2.3.1::gentoo failed (install phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-libs/gdal-2.3.1::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-libs/gdal-2.3.1::gentoo'`. * The complete build log is located at '/var/log/portage/sci-libs:gdal-2.3.1:20180810-085433.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/gdal-2.3.1/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/gdal-2.3.1/temp/environment'. * Working directory: '/var/tmp/portage/sci-libs/gdal-2.3.1/work/gdal-2.3.1/swig/perl' * S: '/var/tmp/portage/sci-libs/gdal-2.3.1/work/gdal-2.3.1' * --------------------------- ACCESS VIOLATION SUMMARY --------------------------- * LOG FILE: "/var/log/sandbox/sandbox-13436.log" * VERSION 1.0 FORMAT: F - Function called FORMAT: S - Access Status FORMAT: P - Path as passed to function FORMAT: A - Absolute Path (not canonical) FORMAT: R - Canonical Path FORMAT: C - Command Line F: mkdir S: deny P: /usr/lib/perl5/x86_64-linux-thread-multi A: /usr/lib/perl5/x86_64-linux-thread-multi R: /usr/lib64/perl5/x86_64-linux-thread-multi C: /usr/bin/perl -MExtUtils::Install -e install([ from_to => {@ARGV}, verbose => '0', uninstall_shadows => '0', dir_mode => '755' ]); -- read /usr/local/lib64/perl5/5.26.2/x86_64-linux-thread-multi/auto/Geo/GDAL/.packlist write /usr/lib/perl5/x86_64-linux-thread-multi/auto/Geo/GDAL/.packlist blib/lib /usr/lib/perl5 blib/arch /usr/lib/perl5/x86_64-linux-thread-multi blib/bin /usr/bin blib/script /usr/bin blib/man1 /usr/man/man1 blib/man3 /usr/man/man3 * -------------------------------------------------------------------------------- * QA Notice: command not found: * * /var/tmp/portage/sci-libs/gdal-2.3.1/temp/environment: line 6719: --without-zstd: command not found !!! When you file a bug report, please include the following information: GENTOO_VM=icedtea-bin-8 CLASSPATH="" JAVA_HOME="/opt/icedtea-bin-3.8.0" JAVACFLAGS="-source 1.7 -target 1.7" COMPILER="" root@leopard:/root(2)# emerge --info '=sci-libs/gdal-2.3.1::gentoo' Portage 2.3.45 (python 3.6.6-final-0, default/linux/amd64/17.0, gcc-7.3.0, glibc-2.27-r6, 4.17.3-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.17.3-gentoo-x86_64-Intel-R-_Core-TM-_i7-2600_CPU_@_3.40GHz-with-gentoo-2.6 KiB Mem: 8115104 total, 977736 free KiB Swap: 16777212 total, 16734952 free Timestamp of repository gentoo: Fri, 10 Aug 2018 09:00:01 +0000 Head commit of repository gentoo: 030a8d5f7447ab63a8f47a385598dd3df4936e68 sh bash 4.4_p23 ld GNU ld (Gentoo 2.30 p3) 2.30.0 distcc[13811] (dcc_trace_version) distcc 3.2rc1 x86_64-pc-linux-gnu; built Jan 19 2018 09:06:14 [disabled] app-shells/bash: 4.4_p23::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.26.2::gentoo dev-lang/python: 2.7.15-r100::sage-on-gentoo, 3.6.6::gentoo dev-util/cmake: 3.11.4-r1::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.30-r3::gentoo, 2.31.1::gentoo sys-devel/gcc: 7.3.0-r3::gentoo sys-devel/gcc-config: 1.9.1::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r3::gentoo sys-kernel/linux-headers: 4.17::gentoo (virtual/os-headers) sys-libs/glibc: 2.27-r6::gentoo Repositories: gentoo location: /usr/portage_leopard sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 x-portage location: /usr/local/portage masters: gentoo priority: 0 g-cpan location: /var/lib/cpan masters: gentoo priority: 1 g-octave location: /var/lib/g-octave masters: gentoo priority: 2 ago location: /var/lib/layman/ago masters: gentoo priority: 50 imaging location: /var/lib/layman/imaging masters: gentoo priority: 50 sage-on-gentoo location: /var/lib/layman/sage-on-gentoo masters: gentoo science priority: 50 science location: /var/lib/layman/science masters: gentoo priority: 50 x11 location: /var/lib/layman/x11 masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.2/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo ftp://ftp.easynet.nl/mirror/gentoo/ " LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de en fr ru" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audiofile aufs automap automount barcode bash-completion berkdb blas blast bluetooth bluray boost btrfs bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cilk clang cli cmake collada contrib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia digitalradio djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evdev evo examples excel exif expat extensions extra extras faac faad ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse gcj gd gdal gdbm gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gstreamer gtk gtk3 gudev guile hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap inotify introspection ipod ipv6 irda ithreads jadetex java jbig jit john jpeg jpeg2k kate kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate libtirpc live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mng mod modules mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg opencv openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds ppp preview-latex proj projectm pstricks pulseaudio python q16 q32 qemu qhull qml qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool rtlsdr sage samba sasl schroedinger science sdk sdl seccomp secure-delete server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite ssl stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tbb tcl tcpd tex tex4ht theora thesaurus threads thunderbird tidy tiff tk tools truetype udev udisks unicode usb utempter v4l v4l2 vaapi vala valgrind vdpau video vim-syntax virt-network virtualbox visio vorbis vpx vtk wav wayland webdav webdav-serf webkit wmf wxwidgets x264 xa xattr xcb xen xetex xft xine xml xmlreader xmlrpc xpm xv xvid xvmc yaml youtube zlib zsh-completion zvbi" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="karbon plan sheets stage words" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="emu efi-64 pc xen" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" L10N="de en fr ru" LCD_DEVICES="cfontz hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="NVPTX X86" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby23" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS root@leopard:/root(3)# emerge -pqv '=sci-libs/gdal-2.3.1::gentoo' [ebuild U ] sci-libs/gdal-2.3.1 [2.3.0-r1] USE="armadillo aux_xml curl fits geos gif gml hdf5 java jpeg jpeg2k lzma mysql netcdf odbc pdf perl png postgres python sqlite threads -debug -doc -mdb -ogdi -opencl -oracle -spatialite -webp -xls -zstd%" PYTHON_TARGETS="python2_7 python3_6 -python3_4 -python3_5"
'USE=-perl emerge -v1 gdal' works.
Created attachment 543064 [details, diff] Fix gdal build with USE=perl and also the --with(out)-zstd USE flag
Patch works for me, thanks!
Having had the same error, applying the patch works for me also!
Well, the patch is two part, the first is moving the '$(use_with zstd)' into the 'myconf=()' (have a look at the ebuild, it's a *facepalm* once you notice it ;) That's why I explicitly move the closing ')' to an extra line. The second part, the one about perl is about the particular way swig generates the perl Makefiles and stuff. And the easiest way I saw was setting "DESTDIR" _for install_, which is empty in the generated Makefiles, and perl-module_src_install seemingly does not set, instead relying on a set "DESTDIR" env-var in the configure-stage being honored in a later 'make install'. Actually, I think that's a bug in perl-module.eclass. ISTR MakeMaker never honored this, i.e. effectively calling perl Makefile.PL DESTDIR="${D}" has AFAIR never generated Makefiles, that installed into "$D". I'm still looking into getting it to install into vendor_perl sub-prefix, too.
Looks like the first half of the patch from comment 2 is no longer needed, as that part of the ebuild has been fixed. I was still having the same error though, so I applied the second half of the patch manually, and gdal now successfully compiles/installs.
Somebody bring the patch to the main tree, still happens.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7bc162059d2bad255b904b1001dce348b364f501 commit 7bc162059d2bad255b904b1001dce348b364f501 Author: Amy Liffey <amynka@gentoo.org> AuthorDate: 2018-10-16 18:24:37 +0000 Commit: Amy Liffey <amynka@gentoo.org> CommitDate: 2018-10-16 18:27:05 +0000 sci-libs/gdal: fix perl sandbox violations Suggested-by: David Haller <gentoo@dhaller.de> Closes: https://bugs.gentoo.org/663282 Signed-off-by: Amy Liffey <amynka@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.11 sci-libs/gdal/gdal-2.3.1.ebuild | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-)
