Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 659840 - sci-libs/gdal-2.3.0: undefined reference to `VSICurlStreamingClearCache()'
Summary: sci-libs/gdal-2.3.0: undefined reference to `VSICurlStreamingClearCache()'
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Sci-geo Project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-07-02 11:57 UTC by Andrey Grozin
Modified: 2021-03-09 22:17 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Quick fix (gdal-2.3.1-curl.patch,471 bytes, patch)
2018-07-13 03:54 UTC, Michael Uleysky
Details | Diff

Note You need to log in before you can comment on or make changes to this bug.
Description Andrey Grozin gentoo-dev 2018-07-02 11:57:21 UTC
/bin/sh /var/tmp/portage/sci-libs/gdal-2.3.0/work/gdal-2.3.0/libtool --mode=link --silent x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-nee
ded gdal_translate_bin.lo  /var/tmp/portage/sci-libs/gdal-2.3.0/work/gdal-2.3.0/libgdal.la -o gdal_translate
/var/tmp/portage/sci-libs/gdal-2.3.0/work/gdal-2.3.0/.libs/libgdal.so: undefined reference to `VSICurlStreamingClearCache()'
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:82: gdalinfo] Error 1
make[1]: *** Waiting for unfinished jobs....
/var/tmp/portage/sci-libs/gdal-2.3.0/work/gdal-2.3.0/.libs/libgdal.so: undefined reference to `VSICurlStreamingClearCache()'
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:85: gdalserver] Error 1
/var/tmp/portage/sci-libs/gdal-2.3.0/work/gdal-2.3.0/.libs/libgdal.so: undefined reference to `VSICurlStreamingClearCache()'
collect2: error: ld returned 1 exit status
make[1]: *** [GNUmakefile:88: gdal_translate] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-libs/gdal-2.3.0/work/gdal-2.3.0/apps'
make: *** [GNUmakefile:105: apps-target] Error 2

dns ~ # emerge --info '=sci-libs/gdal-2.3.0::gentoo'
Portage 2.3.41 (python 3.6.5-final-0, default/linux/amd64/13.0/desktop/plasma, gcc-7.3.0, glibc-2.27-r5, 4.14.2-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.14.2-gentoo-x86_64-Intel-R-_Core-TM-_i7-3610QM_CPU_@_2.30GHz-with-gentoo-2.6
KiB Mem:     8073972 total,   5276480 free
KiB Swap:   10485756 total,  10454524 free
Timestamp of repository gentoo: Mon, 02 Jul 2018 08:45:01 +0000
Head commit of repository gentoo: 6555f7b8a36a43f166365fb8e95de33a12c9baf9
sh bash 4.4_p23
ld GNU ld (Gentoo 2.27 p1.0) 2.27
app-shells/bash:          4.4_p23::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.26.2::gentoo
dev-lang/python:          2.7.15::gentoo, 3.5.5-r1::gentoo, 3.6.5-r1::gentoo
dev-util/cmake:           3.11.4::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6::gentoo
sys-apps/openrc:          0.38.1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.59-r7::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.12.6-r2::gentoo, 1.13.4-r2::gentoo, 1.14.1-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.26.1::gentoo, 2.27::gentoo, 2.28-r2::gentoo, 2.28.1::gentoo, 2.29::gentoo, 2.29.1-r1::gentoo, 2.30-r3::gentoo
sys-devel/gcc:            5.4.0-r4::gentoo, 7.3.0-r3::gentoo
sys-devel/gcc-config:     1.9.1::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r3::gentoo
sys-kernel/linux-headers: 4.17::gentoo (virtual/os-headers)
sys-libs/glibc:           2.27-r5::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-metamanifest: no
    sync-rsync-verify-jobs: 1

lisp
    location: /var/lib/layman/lisp
    masters: gentoo
    priority: 50

science
    location: /var/lib/layman/science
    masters: gentoo
    priority: 50

grozin
    location: /usr/local/portage
    masters: gentoo
    priority: 60

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.2/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch preserve-libs protect-owned sandbox sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=native -pipe"
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo"
LANG="ru_RU.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="ru en"
MAKEOPTS="-j8"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acpi activities alsa amd64 bash-completion berkdb blas bluetooth boehm-gc branding browserplugin bzip2 cairo cdda cdr cli consolekit crypt css cups curl cxx dbus declarative dirac doc dri dvd emacs enca encode exif fam ffmpeg fftw flac fortran gd gdbm gif glamor gmp gpm gsl gtk iconv imagemagick jpeg kde kipi kpathsea kwallet lapack latex lcms ldap libnotify libtirpc lzma mad mng modules mozilla mp3 mp4 mpeg multilib ncurses nls nptl nsplugin offensive ogg opengl openmp pam pango pcre pdf phonon plasma plotutils png policykit ppds python qml qt5 readline schroedinger sdl seccomp semantic-desktop speex spell ssl startup-notification svg tcl tcpd theora tiff tk truetype udev udisks umfpack unicode upower usb v4l2 vorbis widgets win32codecs wxwidgets x264 xattr xcb xcomposite xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="ru en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5 python3_6" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

dns ~ # emerge -pqv '=sci-libs/gdal-2.3.0::gentoo'
[ebuild     U ] sci-libs/gdal-2.3.0 [2.2.3-r2] USE="aux_xml curl doc fits gif hdf5 jpeg netcdf pdf png python -armadillo -debug -geos -gml -java -jpeg2k -mdb -mysql -odbc -ogdi -opencl -oracle -perl -postgres -spatialite -sqlite -threads -webp -xls" PYTHON_TARGETS="python2_7 python3_5 python3_6 -python3_4"
Comment 1 Michael Uleysky 2018-07-13 03:54:53 UTC
Created attachment 539342 [details, diff]
Quick fix

The function VSICurlStreamingClearCache is defined only with some macroses.
Comment 2 Juergen Rose 2018-07-21 12:37:02 UTC
I have the same issue: 'MAKEOPTS=-j1 emerge -v1 gdal' fails with:
...
-I/var/tmp/portage/sci-libs/gdal-2.3.0-r1/work/gdal-2.3.0/gnm -c -o gdalinfo_bin.lo gdalinfo_bin.cpp
/bin/sh /var/tmp/portage/sci-libs/gdal-2.3.0-r1/work/gdal-2.3.0/libtool --mode=link --silent x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed gdalinfo_bin.lo  /var/tmp/portage/sci-libs/gdal-2.3.0-r1/work/gdal-2.3.0/libgdal.la  -o gdalinfo
/var/tmp/portage/sci-libs/gdal-2.3.0-r1/work/gdal-2.3.0/.libs/libgdal.so: undefined reference to `VSICurlStreamingClearCache()'




root@localhost:/root(42)# emerge --info '=sci-libs/gdal-2.3.0-r1::gentoo'
Portage 2.3.43 (python 3.5.5-final-0, default/linux/amd64/17.0/systemd, gcc-7.3.0, glibc-2.27-r5, 4.17.8-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.17.8-gentoo-x86_64-Intel-R-_Core-TM-_i7-6700HQ_CPU_@_2.60GHz-with-gentoo-2.6
KiB Mem:     4040132 total,   1653828 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Thu, 19 Jul 2018 22:30:01 +0000
Head commit of repository gentoo: 90dd0ce06cb996c9eab8311ef8c686d38b8870a3
sh bash 4.4_p23
ld GNU ld (Gentoo 2.30 p3) 2.30.0
app-shells/bash:          4.4_p23::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.26.2::gentoo
dev-lang/python:          2.7.15::gentoo, 3.5.5-r1::gentoo
dev-util/cmake:           3.12.0::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.30-r3::gentoo
sys-devel/gcc:            7.3.0-r3::gentoo
sys-devel/gcc-config:     1.9.1::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r3::gentoo
sys-kernel/linux-headers: 4.17::gentoo (virtual/os-headers)
sys-libs/glibc:           2.27-r5::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: no
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X acl alsa amd64 apache2 bash-completion berkdb boost bzip2 cairo cdda cddb clang cli client crypt cups curl cxx dbus device-mapper dri eds expat ffmpeg firefox fortran gdal gdbm gimp git gnome gnome-keyring gnuplot gnutls gold gphoto2 gpm gstreamer gtk gtk3 iconv icu imagemagick introspection ipv6 jadetex jpeg jpeg2k kerberos latex ldap libtirpc modules mozilla multilib mysql mysqli ncurses nfs nls nptl ntp ogg opencv opengl openmp pam pcre perl png policykit preview-latex pulseaudio python q32 raw readline samba seccomp sqlite ssl sudo systemd szip tcpd test tex theora udev udisks unicode vala xattr xetex xml xorg zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias auth_basic authz_groupfile dav dav_fs authn_file auth_digest" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" CURL_SSL="nss" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby23" USERLAND="GNU" VIDEO_CARDS="virtualbox" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

sci-libs/gdal-2.3.0-r1::gentoo was built with the following:
USE="aux_xml curl jpeg jpeg2k mysql perl png python sqlite threads -armadillo -debug -doc -fits -geos -gif -gml -hdf5 -java -lzma -mdb -netcdf -odbc -ogdi -opencl -oracle -pdf -postgres -spatialite -webp -xls" ABI_X86="(64)" PYTHON_TARGETS="python2_7 python3_5 -python3_4 -python3_6"
CXXFLAGS="-O2 -pipe -std=c++14"
Comment 3 Juergen Rose 2018-07-21 12:39:54 UTC
'USE="threads" MAKEOPTS=-j1 emerge -v1 gdal' works.
Comment 4 Larry the Git Cow gentoo-dev 2018-08-04 12:04:09 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=24b142ee7181dd03692bd636d3ffc2e787dc5202

commit 24b142ee7181dd03692bd636d3ffc2e787dc5202
Author:     Amy Liffey <amynka@gentoo.org>
AuthorDate: 2018-08-04 12:03:05 +0000
Commit:     Amy Liffey <amynka@gentoo.org>
CommitDate: 2018-08-04 12:03:40 +0000

    sci-libs/gdal: fix curl undefined reference
    
    Submitted-by: Michael Uleysky <uleysky@gmail.com>
    Closes: https://bugs.gentoo.org/659840
    Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-libs/gdal/files/gdal-2.3.0-curl.patch | 15 +++++++++++++++
 sci-libs/gdal/gdal-2.3.0-r1.ebuild        |  1 +
 2 files changed, 16 insertions(+)