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Bug 655368 - sci-libs/tensorflow: creates /var/tmp/portage/.keras/keras.json
Summary: sci-libs/tensorflow: creates /var/tmp/portage/.keras/keras.json
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Jason Zaman
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-05-10 04:55 UTC by Georgy Yakovlev
Modified: 2018-05-20 13:46 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Georgy Yakovlev archtester gentoo-dev 2018-05-10 04:55:22 UTC
Hi,

just after merge a directory appears

/tmp/portage/.keras

/var/tmp/portage/.keras # ls -al
total 2
drwxr-xr-x 2 portage portage   3 May  9 21:21 .
drwxrwxr-x 3 portage portage   3 May  9 21:21 ..
-rw-r--r-- 1 portage portage 120 May  9 21:21 keras.json

# cat keras.json 
{
    "epsilon": 1e-07,
    "image_data_format": "channels_last",
    "floatx": "float32",
    "backend": "tensorflow"
}


Funny thing is that I have 
PORTAGE_TMPDIR="/tmp"

Any ideas why this directory and file appears?
my guess is:
/var/tmp/portage is portage user home directory.
and mentioned file is default keras config.

So something during the build creates that config to switch keras backend to tensorflow for user that is's being built as.
I think it should not.

https://keras.io/backend/ < explanation is here.

keras is not installed and never have been.
to verify that ebuild creates that mentioned file I completely deleted tensorflow and re-emerged and voila, dir is here.




Portage 2.3.36 (python 3.5.5-final-0, default/linux/amd64/17.0/desktop/plasma, gcc-7.3.0, glibc-2.26-r7, 4.16.8-gentoo-exp x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.16.8-gentoo-exp-x86_64-AMD_Ryzen_Threadripper_1950X_16-Core_Processor-with-gentoo-2.4.1
KiB Mem:    64809276 total,  55575896 free
KiB Swap:    8388600 total,   8388600 free
Timestamp of repository gentoo: Thu, 10 May 2018 01:46:31 +0000
Head commit of repository gentoo: e503c4b2e3742bd98a8240c311f68ce3bafbc36d

Head commit of repository steam-overlay: 46d2624c5f248bf28e25c25e172e60c2eb988e5f

sh bash 4.4_p19
ld GNU ld (Gentoo 2.30 p2) 2.30.0
distcc[16935] (dcc_mkdir) ERROR: mkdir '/tmp/portage/.distcc/state' failed: No such file or directory [disabled]
app-shells/bash:          4.4_p19::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.26.2::gentoo
dev-lang/python:          2.7.14-r2::gentoo, 3.5.5-r1::gentoo
dev-util/cmake:           3.11.1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.35.5::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.30-r2::gentoo
sys-devel/gcc:            7.3.0-r1::gentoo
sys-devel/gcc-config:     1.9.1::gentoo
sys-devel/libtool:        2.4.6-r5::gentoo
sys-devel/make:           4.2.1-r3::gentoo
sys-kernel/linux-headers: 4.16-r1::gentoo (virtual/os-headers)
sys-libs/glibc:           2.26-r7::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000

gyakovlev
    location: /var/db/repos/gyakovlev
    masters: gentoo

steam-overlay
    location: /var/db/repos/steam
    sync-type: git
    sync-uri: https://github.com/anyc/steam-overlay.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--ask-enter-invalid --jobs=32  --load-average 32"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg cgroup collision-protect compressdebug config-protect-if-modified distlocks downgrade-backup ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms sign splitdebug strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="https://gentoo.osuosl.org/ http://gentoo.mirrors.pair.com/ http://cosmos.illinois.edu/pub/gentoo/ http://lug.mtu.edu/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en"
MAKEOPTS="-j32 -l32"
PKGDIR="/var/cache/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/tmp"
USE="X a52 aac acl acpi activities alsa amd64 bash-completion berkdb bluray branding bzip2 cairo cdda cdr cli crypt cups cxx dbus declarative djvu dri dts dvd dvdr elogind emboss encode epub exif fam fbcon flac fontconfig fortran gdbm gif glamor gpm gtk iconv ios ipv6 jit jpeg kde kipi kwallet lcms libnotify lm_sensors lz4 lzma lzo mad mng mobi module-sign modules mp3 mp4 mpeg multilib ncurses nls nptl numa ogg opengl openmp pam pango pcre pdf phonon plasma png policykit ppds qml qt5 readline seccomp semantic-desktop smp spell ssl startup-notification svg tiff truetype udev udisks unicode upower urandom usb vaapi vdpau vim-syntax vorbis wayland widgets x264 xattr xcb xcomposite xinerama xml xscreensaver xv xvid zlib" ABI_X86="32 64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" CAMERAS="ptp2 fuji" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby22 ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="amdgpu radeon radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

sci-libs/tensorflow-1.8.0::gentoo was built with the following:
USE="-cuda -jemalloc -mpi" ABI_X86="(64)" CPU_FLAGS_X86="avx avx2 fma3 sse sse2 sse3 sse4_1 sse4_2 -fma4" PYTHON_TARGETS="python3_5 -python3_6"
Comment 1 Georgy Yakovlev archtester gentoo-dev 2018-05-10 04:56:38 UTC
in the fist comment first mention of the directory should be /var/tmp/portage just missed that /var part.
Comment 2 Larry the Git Cow gentoo-dev 2018-05-20 13:46:06 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7379cdb578b0c070c846c3fa9f71470e2c5d1320

commit 7379cdb578b0c070c846c3fa9f71470e2c5d1320
Author:     Jason Zaman <perfinion@gentoo.org>
AuthorDate: 2018-05-19 10:21:51 +0000
Commit:     Jason Zaman <perfinion@gentoo.org>
CommitDate: 2018-05-20 13:45:52 +0000

    sci-libs/tensorflow: bazel build fixes
    
    Properly include bazelrc, only one is read so include our generated one
    instead.
    dont sanitize $HOME otherwise .keras ends up in /var/tmp/portage/ (bug
    655368)
    patch BUILD file so it doesnt strip the outputs
    
    Closes: https://bugs.gentoo.org/655368
    Package-Manager: Portage-2.3.24, Repoman-2.3.6

 .../files/tensorflow-1.8.0-0002-dont-strip.patch   | 29 +++++++++++++++
 ...low-1.8.0.ebuild => tensorflow-1.8.0-r1.ebuild} | 42 ++++++++++++++--------
 2 files changed, 56 insertions(+), 15 deletions(-)