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Bug 653952 - dev-util/clion-2018.1 preserved libs warning
Summary: dev-util/clion-2018.1 preserved libs warning
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Christian Strahl
URL:
Whiteboard:
Keywords:
Depends on: 659070
Blocks:
  Show dependency tree
 
Reported: 2018-04-24 08:24 UTC by Simon
Modified: 2018-08-06 15:47 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Simon 2018-04-24 08:24:39 UTC
Ever since emerging dev-util/clion-2018.1 I'm getting the following preserved libs warning 

!!! existing preserved libs:
>>> package: dev-lang/python-3.6.3-r1
 *  - /usr/lib64/libpython3.6m.so.1.0
 *      used by /opt/clion-2018.1/bin/lldb/lib/python3.6/lib-dynload/_asyncio.cpython-36m-x86_64-linux-gnu.so (dev-util/clion-2018.1)
 *      used by /opt/clion-2018.1/bin/lldb/lib/python3.6/lib-dynload/_bisect.cpython-36m-x86_64-linux-gnu.so (dev-util/clion-2018.1)
 *      used by /opt/clion-2018.1/bin/lldb/lib/python3.6/lib-dynload/_blake2.cpython-36m-x86_64-linux-gnu.so (dev-util/clion-2018.1)
 *      used by 54 other files

Is there anything that can be done to fix this?
Comment 1 Christian Strahl 2018-04-28 07:39:25 UTC
(In reply to Simon from comment #0)

Can you please run 'emerge --info' and attach the the output here?
Comment 2 Simon 2018-04-30 09:34:33 UTC
$ emerge --info
Portage 2.3.24 (python 3.5.5-final-0, targets/desktop/gnome/3.26, gcc-7.3.0, glibc-2.25-r11, 4.15.17-gentoo-simon-1.1.0 x86_64)
=================================================================
System uname: Linux-4.15.17-gentoo-simon-1.1.0-x86_64-Intel-R-_Core-TM-_i5-3570K_CPU_@_3.40GHz-with-gentoo-2.4.1
KiB Mem:    16352208 total,   5694072 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Mon, 30 Apr 2018 08:15:12 +0000
Head commit of repository gentoo: 8a7cee7a5a3f71b1b64e6bcc9482938b413c3852

Head commit of repository dantrell-gnome-3-20: d2de9615e0186456e6e5c151cfcf633ca564d585

Head commit of repository dantrell-gnome-3-26: 4d3fc80c871e069fcb926dfe087aca9ce8546ce3

Head commit of repository hossie: 2cb9e9b305525f258427e5cebfdc07376fe72c4a

Head commit of repository jorgicio: 7e37f06a1bd882368885e942c88edb755ad1037f

Head commit of repository toaster: 65d40d835109677bc339a6aff08c0c3f117bacda

Head commit of repository dantrell-gnome: c168bb7db957e26fd47092cd26d4e6b02c640d0c

sh bash 4.4_p12
ld GNU ld (Gentoo 2.29.1 p3) 2.29.1
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.24.3-r1::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.4.8::gentoo, 3.5.5::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.29::dantrell-gnome
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.15.1-r2::gentoo
sys-devel/binutils:       2.29.1-r1::gentoo
sys-devel/gcc:            5.4.0-r4::gentoo, 6.4.0-r1::gentoo, 7.3.0-r1::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r11::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo
    priority: -1000

audio-overlay
    location: /home/simon/src/gentoo-audio/audio-overlay
    masters: gentoo
    priority: 100

dantrell-gnome-3-20
    location: /usr/local/portage/dantrell-gnome-3-20
    sync-type: git
    sync-uri: https://github.com/dantrell/gentoo-overlay-dantrell-gnome-3-20.git
    masters: gentoo
    priority: 100

dantrell-gnome-3-26
    location: /usr/local/portage/dantrell-gnome-3-26
    sync-type: git
    sync-uri: https://github.com/dantrell/gentoo-overlay-dantrell-gnome-3-26.git
    masters: gentoo
    priority: 100

hossie
    location: /usr/local/portage/hossie
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/hossie
    masters: gentoo
    priority: 100

jorgicio
    location: /usr/local/portage/jorgicio
    sync-type: git
    sync-uri: https://github.com/jorgicio/jorgicio-gentoo.git
    masters: gentoo
    priority: 100

simonvanderveldt
    location: /home/simon/src/simonvanderveldt/simonvanderveldt-overlay
    masters: gentoo
    priority: 100

toaster
    location: /usr/local/portage/toaster
    sync-type: git
    sync-uri: https://github.com/toaster/gentoo-overlay.git
    masters: gentoo
    priority: 100

dantrell-gnome
    location: /usr/local/portage/dantrell-gnome
    sync-type: git
    sync-uri: https://github.com/dantrell/gentoo-overlay-dantrell-gnome.git
    masters: gentoo
    priority: 150

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core-avx-i -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=core-avx-i -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS=" --buildpkg-exclude 'virtual/* sys-kernel/*-sources sys-kernel/spl x11-drivers/* net-wireless/broadcom-sta sys-fs/zfs-kmod' --getbinpkg --binpkg-respect-use=y"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.snt.utwente.nl/pub/os/linux/gentoo http://mirror.leaseweb.com/gentoo http://ftp.snt.utwente.nl/pub/os/linux/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_EXTRA_OPTS="-q --exclude-from=/etc/portage/rsync_excludes"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl aes amd64 avx bzip2 cli colord crypt cups cxx dbus dri elogind fortran gdbm gnome gnome-keyring gnome-online-accounts gtk3 gtkstyle iconv introspection libnotify mmx mmxext modules multilib nautilus ncurses nptl openmp pam pcre policykit popcnt pulseaudio readline seccomp smp sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 tcpd tracker unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 ssse3 sse4_1 sse4_2 popcnt aes avx" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby22 ruby23" SANE_BACKENDS="epjitsu" USERLAND="GNU" VIDEO_CARDS="intel i965 amdgpu radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS
Comment 3 Christian Strahl 2018-06-12 12:59:35 UTC
This issue will be fixed with dev-util/clion-2018.1.3:
    https://github.com/gentoo/gentoo/pull/7981
Comment 4 Larry the Git Cow gentoo-dev 2018-08-06 15:47:21 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=abfa5347c25d4c90954d25799a402bb980ddc565

commit abfa5347c25d4c90954d25799a402bb980ddc565
Author:     Christian Strahl <c.a.strahl@gmail.com>
AuthorDate: 2018-04-14 08:48:15 +0000
Commit:     Georgy Yakovlev <gyakovlev@gentoo.org>
CommitDate: 2018-08-06 15:46:13 +0000

    dev-util/clion: version bump to 2018.2
    
    Closes: https://bugs.gentoo.org/653952
    Closes: https://bugs.gentoo.org/659070
    Closes: https://github.com/gentoo/gentoo/pull/9356
    
    Package-Manager: 2.3.40-r1, Repoman-2.3.9

 dev-util/clion/Manifest            |  1 +
 dev-util/clion/clion-2018.2.ebuild | 59 ++++++++++++++++++++++++++++++++++++++
 2 files changed, 60 insertions(+)