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Bug 650416 - sci-biology/cufflinks-2.2.1-r2 : differential.cpp:578:86: error: no matching function for call to std::map<std::_cxx11::basic_string<char>, boost::shared_ptr<SampleDifferenceMetaData> >::insert(std::pair<std::_cxx11::basic_string<cha
Summary: sci-biology/cufflinks-2.2.1-r2 : differential.cpp:578:86: error: no matching ...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: David Seifert
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2018-03-13 17:28 UTC by Toralf Förster
Modified: 2018-06-30 14:59 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,15.19 KB, text/plain)
2018-03-13 17:28 UTC, Toralf Förster 		Details
emerge-history.txt (emerge-history.txt,73.61 KB, text/plain)
2018-03-13 17:28 UTC, Toralf Förster 		Details
environment (environment,134.87 KB, text/plain)
2018-03-13 17:28 UTC, Toralf Förster 		Details
etc.portage.tbz2 (etc.portage.tbz2,11.38 KB, application/x-bzip)
2018-03-13 17:28 UTC, Toralf Förster 		Details
logs.tbz2 (logs.tbz2,7.50 KB, application/x-bzip)
2018-03-13 17:28 UTC, Toralf Förster 		Details
sci-biology:cufflinks-2.2.1-r2:20180313-153219.log (sci-biology:cufflinks-2.2.1-r2:20180313-153219.log,28.45 KB, text/plain)
2018-03-13 17:28 UTC, Toralf Förster 		Details
temp.tbz2 (temp.tbz2,36.73 KB, application/x-bzip)
2018-03-13 17:28 UTC, Toralf Förster 		Details
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Description Toralf Förster gentoo-dev 2018-03-13 17:28:01 UTC 
                                                             ^
differential.cpp: In function ‘boost::shared_ptr<SampleDifferenceMetaData> get_metadata(std::__cxx11::string)’:
differential.cpp:578:86: error: no matching function for call to ‘std::map<std::__cxx11::basic_string<char>, boost::shared_ptr<SampleDifferenceMetaData> >::insert(std::pair<std::__cxx11::basic_string<char>, SampleDifferenceMetaData*>)’
 meta_data_table.insert(make_pair(description, new SampleDifferenceMetaData()));
                                                                              ^
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/5.4.0/include/g++-v5/map:61:0,

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-hardened_libressl_20180311-210730

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-5.4.0 *
 [2] x86_64-pc-linux-gnu-5.4.0-hardenednopie
 [3] x86_64-pc-linux-gnu-5.4.0-hardenednopiessp
 [4] x86_64-pc-linux-gnu-5.4.0-hardenednossp
 [5] x86_64-pc-linux-gnu-5.4.0-vanilla

Available Python interpreters, in order of preference:
  [1]   python3.5
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby22 (with Rubygems)
  [2]   ruby23 (with Rubygems) *



emerge -qpv sci-biology/cufflinks
[ebuild  N    ] sci-biology/cufflinks-2.2.1-r2  USE="-debug" PYTHON_TARGETS="python2_7"
Comment 1 Toralf Förster gentoo-dev 2018-03-13 17:28:04 UTC 
Created attachment 523790 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2018-03-13 17:28:07 UTC 
Created attachment 523792 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2018-03-13 17:28:10 UTC 
Created attachment 523794 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2018-03-13 17:28:13 UTC 
Created attachment 523796 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2018-03-13 17:28:16 UTC 
Created attachment 523798 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2018-03-13 17:28:19 UTC 
Created attachment 523800 [details]
sci-biology:cufflinks-2.2.1-r2:20180313-153219.log
Comment 7 Toralf Förster gentoo-dev 2018-03-13 17:28:22 UTC 
Created attachment 523802 [details]
temp.tbz2
Comment 8 Larry the Git Cow gentoo-dev 2018-06-30 14:59:46 UTC 
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e035eabc7b791b9854e53cf596b65e8330ef6e83

commit e035eabc7b791b9854e53cf596b65e8330ef6e83
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2018-06-30 14:58:58 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2018-06-30 14:59:32 +0000

    sci-biology/cufflinks: Fix implicit conversion in make_pair call
    
    Closes: https://bugs.gentoo.org/650416
    Package-Manager: Portage-2.3.41, Repoman-2.3.9

 sci-biology/cufflinks/cufflinks-2.2.1-r2.ebuild               |  3 ++-
 .../cufflinks/files/cufflinks-2.2.1-gcc5-make_shared.patch    | 11 +++++++++++
 2 files changed, 13 insertions(+), 1 deletion(-)