Hi, I tried to convert the tiny bowtie-2.2.9-fix-c++14.patch to apply over 2.3.4.1 sources but since I do not know what I am doing I failed to realize why the second hunk does not apply. Please try to bring into the tree the bowtie-2.3.4.1 version. Thank you.
Likewise, bowtie1 could be bumped to 1.2.2.
Created attachment 558738 [details] build.log Without the patch converted to the current release I get the following errors.
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/proj/sci.git/commit/?id=2b44f30b60c65d2485250cb71e7dabe10a2694a6 commit 2b44f30b60c65d2485250cb71e7dabe10a2694a6 Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> AuthorDate: 2019-03-27 22:45:47 +0000 Commit: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> CommitDate: 2019-03-27 22:45:47 +0000 sci-biology/bowtie: patch --interleaved, add KEYWORDS Do not unset contents of CFLAGS and CXXFLAGS. Thanks to ch4rr0 at https://github.com/BenLangmead/bowtie2/issues/239 Add deemed patch from https://github.com/BenLangmead/bowtie2/issues/240 Added KEYWORDS. Closes: https://bugs.gentoo.org/649824 Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> .../bowtie/{bowtie-2.3.5.ebuild => bowtie-2.3.5-r1.ebuild} | 5 ++--- sci-biology/bowtie/files/bowtie-2.3.5-fix-interleaved.patch | 13 +++++++++++++ 2 files changed, 15 insertions(+), 3 deletions(-)
