Bug 649538 – dev-python/jupyter_core-4.4.0: multiple test failures

• Status: RESOLVED OBSOLETE
• Product: Gentoo Linux

[Description Thomas Deutschmann (RETIRED) 2018-03-04 05:07:55 UTC]

Created attachment 522260 [details]
build.log

> running install_scripts
> creating /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/scripts
> copying /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/scripts/jupyter-migrate -> /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/scripts
> copying /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/scripts/jupyter -> /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/scripts
> changing mode of /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/scripts/jupyter-migrate to 755
> changing mode of /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/scripts/jupyter to 755
> running install_egg_info
> Writing /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/lib/jupyter_core-4.4.0-py2.7.egg-info
> ============================================================================= test session starts =============================================================================
> platform linux2 -- Python 2.7.14, pytest-3.0.3, py-1.4.30, pluggy-0.4.0
> rootdir: /var/tmp/portage/dev-python/jupyter_core-4.4.0/work/jupyter_core-4.4.0-python2_7/test/lib, inifile: 
> plugins: cov-2.3.1
> collected 40 items
> 
> jupyter_core/tests/test_application.py ......
> jupyter_core/tests/test_command.py .........FF
> jupyter_core/tests/test_migrate.py ........
> jupyter_core/tests/test_paths.py ...............
> 
> ================================================================================== FAILURES ===================================================================================
> ______________________________________________________________________________ test_not_on_path _______________________________________________________________________________
> 
> tmpdir = local('/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_not_on_path0')
> 
>     def test_not_on_path(tmpdir):
>         a = tmpdir.mkdir("a")
>         jupyter = a.join('jupyter')
>         jupyter.write(
>             'from jupyter_core import command; command.main()'
>         )
>         jupyter.chmod(0o700)
>         witness = a.join('jupyter-witness')
>         witness_src = '#!%s\n%s\n' % (sys.executable, 'print("WITNESS ME")')
>         write_executable(witness, witness_src)
>     
>         env = {'PATH': ''}
>         if 'SYSTEMROOT' in os.environ:  # Windows http://bugs.python.org/issue20614
>             env[str('SYSTEMROOT')] = os.environ['SYSTEMROOT']
>         if sys.platform == 'win32':
>             env[str('PATHEXT')] = '.EXE'
>         # This won't work on windows unless
> >       out = check_output([sys.executable, str(jupyter), 'witness'], env=env)
> 
> jupyter_core/tests/test_command.py:140: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> 
> popenargs = (['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter', 'witness'],)
> kwargs = {'env': {'PATH': ''}}, process = <subprocess.Popen object at 0xb645fbac>, output = '', unused_err = None, retcode = 1
> cmd = ['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter', 'witness']
> 
>     def check_output(*popenargs, **kwargs):
>         r"""Run command with arguments and return its output as a byte string.
>     
>         If the exit code was non-zero it raises a CalledProcessError.  The
>         CalledProcessError object will have the return code in the returncode
>         attribute and output in the output attribute.
>     
>         The arguments are the same as for the Popen constructor.  Example:
>     
>         >>> check_output(["ls", "-l", "/dev/null"])
>         'crw-rw-rw- 1 root root 1, 3 Oct 18  2007 /dev/null\n'
>     
>         The stdout argument is not allowed as it is used internally.
>         To capture standard error in the result, use stderr=STDOUT.
>     
>         >>> check_output(["/bin/sh", "-c",
>         ...               "ls -l non_existent_file ; exit 0"],
>         ...              stderr=STDOUT)
>         'ls: non_existent_file: No such file or directory\n'
>         """
>         if 'stdout' in kwargs:
>             raise ValueError('stdout argument not allowed, it will be overridden.')
>         process = Popen(stdout=PIPE, *popenargs, **kwargs)
>         output, unused_err = process.communicate()
>         retcode = process.poll()
>         if retcode:
>             cmd = kwargs.get("args")
>             if cmd is None:
>                 cmd = popenargs[0]
> >           raise CalledProcessError(retcode, cmd, output=output)
> E           CalledProcessError: Command '['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter', 'witness']' returned non-zero exit status 1
> 
> /usr/lib/python2.7/subprocess.py:219: CalledProcessError
> ---------------------------------------------------------------------------- Captured stderr call -----------------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter", line 1, in <module>
>     from jupyter_core import command; command.main()
> ImportError: No module named jupyter_core
> _____________________________________________________________________________ test_path_priority ______________________________________________________________________________
> 
> tmpdir = local('/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_path_priority0')
> 
>     def test_path_priority(tmpdir):
>         a = tmpdir.mkdir("a")
>         jupyter = a.join('jupyter')
>         jupyter.write(
>             'from jupyter_core import command; command.main()'
>         )
>         jupyter.chmod(0o700)
>         witness_a = a.join('jupyter-witness')
>         witness_a_src = '#!%s\n%s\n' % (sys.executable, 'print("WITNESS A")')
>         write_executable(witness_a, witness_a_src)
>     
>         b = tmpdir.mkdir("b")
>         witness_b = b.join('jupyter-witness')
>         witness_b_src = '#!%s\n%s\n' % (sys.executable, 'print("WITNESS B")')
>         write_executable(witness_b, witness_b_src)
>     
>         env = {'PATH':  str(b)}
>         if 'SYSTEMROOT' in os.environ:  # Windows http://bugs.python.org/issue20614
>             env[str('SYSTEMROOT')] = os.environ['SYSTEMROOT']
>         if sys.platform == 'win32':
>             env[str('PATHEXT')] = '.EXE'
> >       out = check_output([sys.executable, str(jupyter), 'witness'], env=env)
> 
> jupyter_core/tests/test_command.py:165: 
> _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
> 
> popenargs = (['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter', 'witness'],)
> kwargs = {'env': {'PATH': '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_path_priority0/b'}}
> process = <subprocess.Popen object at 0xb64c050c>, output = '', unused_err = None, retcode = 1
> cmd = ['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter', 'witness']
> 
>     def check_output(*popenargs, **kwargs):
>         r"""Run command with arguments and return its output as a byte string.
>     
>         If the exit code was non-zero it raises a CalledProcessError.  The
>         CalledProcessError object will have the return code in the returncode
>         attribute and output in the output attribute.
>     
>         The arguments are the same as for the Popen constructor.  Example:
>     
>         >>> check_output(["ls", "-l", "/dev/null"])
>         'crw-rw-rw- 1 root root 1, 3 Oct 18  2007 /dev/null\n'
>     
>         The stdout argument is not allowed as it is used internally.
>         To capture standard error in the result, use stderr=STDOUT.
>     
>         >>> check_output(["/bin/sh", "-c",
>         ...               "ls -l non_existent_file ; exit 0"],
>         ...              stderr=STDOUT)
>         'ls: non_existent_file: No such file or directory\n'
>         """
>         if 'stdout' in kwargs:
>             raise ValueError('stdout argument not allowed, it will be overridden.')
>         process = Popen(stdout=PIPE, *popenargs, **kwargs)
>         output, unused_err = process.communicate()
>         retcode = process.poll()
>         if retcode:
>             cmd = kwargs.get("args")
>             if cmd is None:
>                 cmd = popenargs[0]
> >           raise CalledProcessError(retcode, cmd, output=output)
> E           CalledProcessError: Command '['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter', 'witness']' returned non-zero exit status 1
> 
> /usr/lib/python2.7/subprocess.py:219: CalledProcessError
> ---------------------------------------------------------------------------- Captured stderr call -----------------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/var/tmp/portage/dev-python/jupyter_core-4.4.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter", line 1, in <module>
>     from jupyter_core import command; command.main()
> ImportError: No module named jupyter_core
> ===================================================================== 2 failed, 38 passed in 0.94 seconds =====================================================================
>  * ERROR: dev-python/jupyter_core-4.4.0::gentoo failed (test phase):
>  *   (no error message)


Portage 2.3.19 (python 3.5.4-final-0, default/linux/x86/17.0, gcc-6.4.0, glibc-2.25-r10, 4.9.76-gentoo-r1 i686)
=================================================================
System uname: Linux-4.9.76-gentoo-r1-i686-Intel-R-_Core-TM-_i7-3770K_CPU_@_3.50GHz-with-gentoo-2.4.1
KiB Mem:     3108324 total,   1505088 free
KiB Swap:     488276 total,    488276 free
Timestamp of repository gentoo: Sat, 03 Mar 2018 23:14:41 +0000
Head commit of repository gentoo: aca5ee18c254f7fc5d17e2dbf7d70d27a54dcacb

sh bash 4.4_p12
ld GNU ld (Gentoo 2.29.1 p3) 2.29.1
app-shells/bash:          4.4_p12::gentoo
dev-lang/perl:            5.24.3::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.5.4-r1::gentoo
dev-util/cmake:           3.9.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.34.11::gentoo
sys-apps/sandbox:         2.12::gentoo
sys-devel/autoconf:       2.69-r4::gentoo
sys-devel/automake:       1.9.6-r5::gentoo, 1.10.3-r3::gentoo, 1.12.6-r2::gentoo, 1.15.1-r1::gentoo
sys-devel/binutils:       2.29.1-r1::gentoo
sys-devel/gcc:            6.4.0-r1::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r10::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000

ABI="x86"
ABI_X86="32"
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
ACCEPT_PROPERTIES="*"
ACCEPT_RESTRICT="*"
ARCH="x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=pentium4m -mtune=pentium4m"
CHOST="i686-pc-linux-gnu"
CHOST_x86="i686-pc-linux-gnu"
COLLISION_IGNORE="/lib/modules/* *.py[co] *$py.class */dropin.cache"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CPU_FLAGS_X86="mmx mmxext sse sse2"
CXXFLAGS="-O2 -pipe -march=pentium4m -mtune=pentium4m"
DEFAULT_ABI="x86"
EDITOR="/usr/bin/mcedit"
ELIBC="glibc"
EPREFIX=""
EROOT="/"
FCFLAGS="-O2 -march=i686 -pipe"
FEATURES="assume-digests binpkg-logs cgroup config-protect-if-modified distlocks downgrade-backup ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=i686 -pipe"
GCC_SPECS=""
GRUB_PLATFORMS="efi-32 pc"
GSETTINGS_BACKEND="dconf"
HOME="/root"
INFOPATH="/usr/share/gcc-data/i686-pc-linux-gnu/6.4.0/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.29.1/info:/usr/share/info"
INPUT_DEVICES="libinput keyboard mouse"
IUSE_IMPLICIT="abi_x86_32 prefix prefix-chain prefix-guest"
KERNEL="linux"
L10N="en en-US de de-DE"
LANG="en_US.UTF-8"
LC_ALL="en_US.UTF-8"
LC_MESSAGES="C"
LC_PAPER="de_DE.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LIBDIR_x86="lib"
LINGUAS="en de"
LOGNAME="root"
MAIL="/var/mail/root"
MAKEOPTS="--jobs 5 --load-average 7.95"
MANPAGER="manpager"
MULTILIB_ABIS="x86"
NOCOLOR="true"
OFFICE_IMPLEMENTATION="libreoffice"
OLDPWD="/root"
OPENGL_PROFILE="xorg-x11"
PAGER="/usr/bin/less"
PATH="/usr/i686-pc-linux-gnu/gcc-bin/6.4.0:/usr/lib/llvm/5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin"
PHP_TARGETS="php5-6 php7-0"
POSTGRES_TARGETS="postgres9_5"
PWD="/tmp/stable"
PYTHONDONTWRITEBYTECODE="1"
PYTHON_SINGLE_TARGET="python3_5"
PYTHON_TARGETS="python2_7 python3_5"
QT_GRAPHICSSYSTEM="raster"
ROOT="/"
ROOTPATH="/usr/i686-pc-linux-gnu/gcc-bin/6.4.0:/usr/lib/llvm/5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin"
RUBY_TARGETS="ruby22 ruby23"
SHELL="/bin/bash"
SHLVL="2"
SSH_TTY="/dev/pts/0"
TERM="screen"
TMUX="/tmp/tmux-0/default,4816,0"
TMUX_PANE="%0"
TWISTED_DISABLE_WRITING_OF_PLUGIN_CACHE="1"
USER="root"
USERLAND="GNU"
VIDEO_CARDS="vmware"

[Comment 1 Andreas Sturmlechner 2018-03-07 15:08:27 UTC]

Is the same test failure also in 4.3.0?

[Comment 2 Thomas Deutschmann (RETIRED) 2018-04-22 00:12:43 UTC]

Created attachment 528184 [details]
build.log v4.3.0

Looks like v4.3.0 is failing with the same error.

[Comment 3 Marius Brehler 2018-05-02 08:05:20 UTC]

Probably a missing dep, as I cannot reproduce this on my machine with jupyter_core already installed.

[Comment 4 Andreas Sturmlechner 2018-05-10 17:01:44 UTC]

Tests require installed jupyter_core.

[Comment 5 Larry the Git Cow 2018-05-10 17:04:53 UTC]

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=22257699f838ccc66ae62750f347cb4501250998

commit 22257699f838ccc66ae62750f347cb4501250998
Author:     Andreas Sturmlechner <[e-mail]>
AuthorDate: 2018-05-10 17:04:11 +0000
Commit:     Andreas Sturmlechner <[e-mail]>
CommitDate: 2018-05-10 17:04:43 +0000

    dev-python/jupyter_core: Restrict tests, need existing installation
    
    Tests succeed when package is installed in advance.
    
    Bug: https://bugs.gentoo.org/649538
    Package-Manager: Portage-2.3.36, Repoman-2.3.9

 dev-python/jupyter_core/jupyter_core-4.4.0.ebuild | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

[Comment 6 Andreas Sturmlechner 2018-05-10 17:05:20 UTC]

No longer blocking stabilisation.

[Comment 7 Michał Górny 2020-03-27 20:24:21 UTC]

Old version removed.  Please reopen if you can reproduce with current.