x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSW_SSE2 -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c dropnnw2.c -o droplnw_sse.o dropnnw2.c: In function ‘do_work’: dropnnw2.c:567:18: error: ‘OVERFLOW’ undeclared (first use in this function); did you mean ‘OVERFLOW_SCORE’? if (score == OVERFLOW) { ^~~~~~~~ OVERFLOW_SCORE ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.0-hardened_20180218-104445 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-7.3.0 * Available Python interpreters, in order of preference: [1] python3.5 [2] python3.6 (fallback) [3] python2.7 (fallback) [4] pypy3 (fallback) [5] pypy (fallback) Available Ruby profiles: [1] ruby22 (with Rubygems) [2] ruby23 (with Rubygems) * java-config: The following VMs are available for generation-2: *) IcedTea JDK 3.6.0 [icedtea-bin-8] Available Java Virtual Machines: [1] icedtea-bin-8 system-vm emerge -qpv sci-biology/fasta [ebuild N ] sci-biology/fasta-36.3.5e USE="-debug {-test}" CPU_FLAGS_X86="sse2"
Created attachment 520710 [details] emerge-info.txt
Created attachment 520712 [details] emerge-history.txt
Created attachment 520714 [details] environment
Created attachment 520716 [details] etc.portage.tbz2
Created attachment 520718 [details] sci-biology:fasta-36.3.5e:20180223-085849.log
*** Bug 741186 has been marked as a duplicate of this bug. ***
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5d5c2e0b0e7e7bf0a1a79187db493ba0095d414d commit 5d5c2e0b0e7e7bf0a1a79187db493ba0095d414d Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-03-19 17:07:58 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-03-19 17:07:58 +0000 sci-biology/fasta: drop 36.3.5e Closes: https://bugs.gentoo.org/648618 Closes: https://bugs.gentoo.org/828700 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/fasta/Manifest | 1 - sci-biology/fasta/fasta-36.3.5e.ebuild | 79 ---------------------- .../fasta/files/fasta-36.3.5e-ldflags.patch | 74 -------------------- 3 files changed, 154 deletions(-) Additionally, it has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=84e1af9d2932d855c6f05b3bda91a4dfedd2b0a4 commit 84e1af9d2932d855c6f05b3bda91a4dfedd2b0a4 Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-03-19 17:07:57 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-03-19 17:07:57 +0000 sci-biology/fasta: add 36.3.8h Bug: https://bugs.gentoo.org/648618 Bug: https://bugs.gentoo.org/828700 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/fasta/Manifest | 1 + sci-biology/fasta/fasta-36.3.8h.ebuild | 81 ++++++++++++++++++++++ .../fasta/files/fasta-36.3.8h-ldflags.patch | 63 +++++++++++++++++ 3 files changed, 145 insertions(+)
