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Bug 641580 - sci-biology/cufflinks-2.2.1-r2 : GHash.hh:91:44: error: type/value mismatch at argument 1 in template parameter list for template<class _Tp> struct std::hash
Summary: sci-biology/cufflinks-2.2.1-r2 : GHash.hh:91:44: error: type/value mismatch a...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2017-12-18 15:44 UTC by Toralf Förster
Modified: 2017-12-24 11:30 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.88 KB, text/plain)
2017-12-18 15:44 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,176.56 KB, text/plain)
2017-12-18 15:44 UTC, Toralf Förster
Details
environment (environment,137.94 KB, text/plain)
2017-12-18 15:44 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,18.45 KB, application/x-bzip)
2017-12-18 15:44 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,7.82 KB, application/x-bzip)
2017-12-18 15:44 UTC, Toralf Förster
Details
sci-biology:cufflinks-2.2.1-r2:20171218-144710.log (sci-biology:cufflinks-2.2.1-r2:20171218-144710.log,18.85 KB, text/plain)
2017-12-18 15:44 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,36.22 KB, application/x-bzip)
2017-12-18 15:44 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2017-12-18 15:44:28 UTC
                 from clustering.cpp:10:
GHash.hh: In member function ‘GHash<OBJ>::GHashEntry* GHash<OBJ>::NextEntry()’:
GHash.hh:91:44: error: type/value mismatch at argument 1 in template parameter list for ‘template<class _Tp> struct std::hash’
     while (pos<fCapacity && hash[pos].hash<0) pos++;
                                            ^
GHash.hh:91:44: note:   expected a type, got ‘0’

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0-desktop-plasma_libressl_20171214-165920

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.5
  [2]   python2.7 (fallback)
  [3]   pypy (fallback)
Available Ruby profiles:
  [1]   ruby22 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.6.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpv sci-biology/cufflinks
[ebuild  N    ] sci-biology/cufflinks-2.2.1-r2  USE="-debug" PYTHON_TARGETS="python2_7"
Comment 1 Toralf Förster gentoo-dev 2017-12-18 15:44:32 UTC
Created attachment 510730 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2017-12-18 15:44:35 UTC
Created attachment 510732 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2017-12-18 15:44:38 UTC
Created attachment 510734 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2017-12-18 15:44:41 UTC
Created attachment 510736 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2017-12-18 15:44:45 UTC
Created attachment 510738 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2017-12-18 15:44:48 UTC
Created attachment 510740 [details]
sci-biology:cufflinks-2.2.1-r2:20171218-144710.log
Comment 7 Toralf Förster gentoo-dev 2017-12-18 15:44:52 UTC
Created attachment 510742 [details]
temp.tbz2
Comment 8 Larry the Git Cow gentoo-dev 2017-12-24 11:30:51 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ccbd59a1a246014bf441e44a9f2bd8632a70c20e

commit ccbd59a1a246014bf441e44a9f2bd8632a70c20e
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2017-12-24 11:30:20 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2017-12-24 11:30:38 +0000

    sci-biology/cufflinks: Fix building with GCC 7
    
    Closes: https://bugs.gentoo.org/641580
    Package-Manager: Portage-2.3.19, Repoman-2.3.6

 sci-biology/cufflinks/cufflinks-2.2.1-r2.ebuild    |   2 +
 .../files/cufflinks-2.2.1-format-security.patch    |  16 +++
 .../cufflinks/files/cufflinks-2.2.1-gcc7.patch     | 121 +++++++++++++++++++++
 3 files changed, 139 insertions(+)