Here's config.log excerpt: checking for szlib... suppressed checking for thread safe support... configure: error: The thread-safe library is incompatible with the high-level library. --disable-hl can be used to prevent building the high-level library (recommended). Alternatively, --enable-unsupported will allow building the high-level library, though this configuration is not supported by The HDF Group. sci-libs/hdf5-1.8.18 has mutually exclusive USE-flags "threads" and "hl". 1.10.1 has only the first one: % emerge -pqv hdf5 [ebuild R ] sci-libs/hdf5-1.10.1 USE="threads* zlib -cxx -debug -examples -fortran -mpi -static-libs -szip (-fortran2003%)" See also bug 594560.
Created attachment 508760 [details] hdf5-1.10.1 config.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f86102f0cd7d458906386fc0b10ef4de792722a0 commit f86102f0cd7d458906386fc0b10ef4de792722a0 Author: Benda Xu <heroxbd@gentoo.org> AuthorDate: 2017-12-11 05:38:57 +0000 Commit: Benda Xu <heroxbd@gentoo.org> CommitDate: 2017-12-11 06:06:27 +0000 sci-libs/hdf5: Add back hl USE flag and conditions. Suggested-by: Nikolaj Šujskij <skrattaren@yandex.ru> Closes: https://bugs.gentoo.org/640220 Package-Manager: Portage-2.3.16, Repoman-2.3.6 sci-libs/hdf5/hdf5-1.10.1.ebuild | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-)
Bringing back USE-flag is great, but without `$(use_enable hl)` in `src_configure` it doesn't do much.
See PR: https://github.com/gentoo/gentoo/pull/6542
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b269167ddba7b8485ec67042f77699bded47d296 commit b269167ddba7b8485ec67042f77699bded47d296 Author: Benda Xu <heroxbd@gentoo.org> AuthorDate: 2017-12-13 05:56:07 +0000 Commit: Benda Xu <heroxbd@gentoo.org> CommitDate: 2017-12-19 07:16:01 +0000 sci-libs/hdf5: Add back hl configuration options. Closes: https://bugs.gentoo.org/640220 Package-Manager: Portage-2.3.16, Repoman-2.3.6 sci-libs/hdf5/hdf5-1.10.1.ebuild | 1 + 1 file changed, 1 insertion(+)
