Bug 640214 – app-emulation/virtualbox-5.1.30::gentoo: /var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/java/src/nsAppFileLocProviderProxy.h:42:17: fatal error: jni.h: No such file or directory

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Thomas Beutin 2017-12-07 19:31:47 UTC]

# emerge --info =app-emulation/virtualbox-5.1.30::gentoo
Portage 2.3.13 (python 2.7.14-final-0, default/linux/amd64/13.0/desktop, gcc-6.4.0, glibc-2.25-r9, 4.12.12-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.12.12-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.4.1
KiB Mem:    16357780 total,   1046684 free
KiB Swap:   33554428 total,  33554428 free
Timestamp of repository gentoo: Wed, 06 Dec 2017 10:30:01 +0000
Head commit of repository gentoo: 3b39b1c65e2a72ebd34726052df07f03da1dcecd
sh bash 4.3_p48-r1
ld GNU ld (Gentoo 2.28.1 p1.0) 2.28.1
app-shells/bash:          4.3_p48-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.3::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.4.5-r1::gentoo, 3.5.4-r1::gentoo, 3.6.3-r1::gentoo
dev-util/cmake:           3.8.2::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/openrc:          0.34.9::gentoo
sys-apps/sandbox:         2.10-r4::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15.1-r1::gentoo
sys-devel/binutils:       2.28.1::gentoo, 2.29.1-r1::gentoo
sys-devel/gcc:            6.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.25-r9::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-extra-opts: 

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

barzog-overlay
    location: /mnt/gentoo/layman/barzog-overlay
    masters: gentoo
    priority: 50

desktop-effects
    location: /mnt/gentoo/layman/desktop-effects
    masters: gentoo
    priority: 50

gentoo-mate
    location: /mnt/gentoo/layman/gentoo-mate
    masters: gentoo
    priority: 50

java
    location: /mnt/gentoo/layman/java
    masters: gentoo
    priority: 50

prism-overlay
    location: /mnt/gentoo/layman/prism-overlay
    masters: gentoo
    priority: 50

python
    location: /mnt/gentoo/layman/python
    masters: gentoo
    priority: 50

rion
    location: /mnt/gentoo/layman/rion
    masters: gentoo
    priority: 50

science
    location: /mnt/gentoo/layman/science
    masters: gentoo
    priority: 50

seden
    location: /mnt/gentoo/layman/seden
    masters: gentoo
    priority: 50

sunrise
    location: /mnt/gentoo/layman/sunrise
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=sandybridge -fomit-frame-pointer -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/fax /usr/share/gnupg/qualified.txt /var/spool/fax/etc /var/spool/munin-async/.ssh"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.0/ext-active/ /etc/php/apache2-php7.1/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.0/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.0/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=sandybridge -fomit-frame-pointer -O2 -pipe"
DISTDIR="/mnt/gentoo/distfiles/"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
INSTALL_MASK="/usr/lib/systemd/"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="R X X509 a52 aac aalib accounting acl acpi adns aim aio alsa amd64 amr ansi ao aot apache2 apng applet archive ass audio audiofile automount avahi avx awt bacula-console bash-completion bazaar bcmath berkdb bidi bind-mysql bittorrent blas bluetooth bluray bonobo boost bzip2 cacert cairo caja calendar caps ccache cdb cdda cddb cdio cdparanoia cdr cgi chipcard chroot clang colord command-args consolekit corefonts cpudetection cpulimit cracklib cramfs crypt cscope css csv ctype cups curl curlwrappers customlog cvs cvsgraph cxx cyrus dba dbi dbm dbus dbx devhelp device-mapper devmap dga dhcp dirac directfb djvu dlna dlopen dnsdb dri dri3 drm dts dv dvb dvd dvdr dvi ecc egl enchant encode excel exif expat faad fam fastcgi fat fdk ffmpeg fftw fits flac flash flatfile fltk fontconfig fonts fpx ftp fuse fusefs gallium gd gdal gdbm gdu geoip geos gif gimp ginac git glib glpk glut gmp gnome-keyring gnuplot gpg gphoto2 graphviz gs gsf gsl gssapi gstreamer gtk gtk2 gtk3 gudev gzip h323 hardened hardenedphp hddtemp hdf5 hdri highlight hpn html http hunspell hwdb iconv icq icu idea idled idn imap imlib imlib2 inifile innodb int64 introspection ios ipalias ipc ipod ipv6 iso jabber jack java javascript jbig jingle jit jpeg jpeg2k json kdrive kerberos keymap kmod kpathsea lame lapack latex lcms ldap less libass libcxx libnotify libsamplerate libv4l libv4l2 libwww live llvm lm_sensors lmtp logrotate logwatch lua lz4 lzma lzo mad magic matroska mbox mcal md5sum memlimit mercurial metis mgetty mhash midi milter mime mimencode ming mmap mms mmx mmxext mng mp3 mp4 mpeg mplayer msn mtp multilib mumps musepack musicbrainz mysql mysqli nagios-dns nagios-game nagios-ntp nagios-ping nagios-ssh natspec ncurses net netboot netcdf netlink network network-uri networkmanager nfs nis nls nntp nptl nsplugin nss ntfs ntp oav ocaml ocamlopt ocatve octave odbc offensive ogg openal opencl openexr opengl openmp openrc openssh openssl orc osc oscar pam pam_chroot pam_console pam_timestamp pango parse-clocks pcf pci pcntl pcre pda pdf pdfkit pdflib perl pgo php pic plotutils png policykit portaudio posix postfix postgis postgres postproc postscript ppds procmail ps pulseaudio pwdb python qdbm qt5 quotas quvi radius raw rdesktop rdp readline recode reiserfs rpc rrdtool rss rtmp ruby samba sample sasl scanner schroedinger scotch screen sendfile sensord session sftp sftplogging shaper shared sharedext shorten sieve simplexml slang slp smartcard smime smp sms smtp sna sndfile snmp snortsam soap sockets socks5 sound sox spamassassin sparse spatialite speex spell spice spl sql sqlite sqlite3 sse sse2 sse3 sse4 sse4_1 ssh ssl ssse3 stream subversion svg sysfs syslog sysvipc szip t1lib taglib tcpd telepathy test-programs theora threads tidy tiff timidity tokenizer tools transparent-proxy truetype truetype-fonts tslib twolame type1-fonts udev udisks unicode upnp upnp-av upower usb userlocales utf8 uuid v4l vaapi vala vcd vdpau vhosts video vim-syntax virtual-users virus-scan vnc vorbis vpx vte wayland wddx weather webdav webkit webm webp wifi win32codecs withsamplescripts wmf x264 x265 xattr xcb xcomposite xetex xface xfs xft xinerama xinetd xml xml2 xmlrpc xmp xmpp xorg xosd xpdf-headers xpm xps xrandr xscreensaver xsl xslt xv xvfb xvid xvmc xz yahoo yaml yaz zlib zvbi" ABI_X86="32 64" APACHE2_MODULES="access auth auth_basic auth_digest authn_default authn_core authn_file authn_dbm authn_dbd authn_alias authn_anon authz_core authz_groupfile authz_host authz_user authz_dbd authz_dbm authz_owner authz_default dbd ident imagemap alias echo charset_lite cache file_cache disk_cache mem_cache ext_filter case_filter case-filter-in deflate filter mime_magic cern_meta proxy proxy_connect proxy_ftp http2 proxy_html proxy_http proxy_ajp proxy_balancer proxy_fcgi proxy_wstunnel expires headers usertrack info include cgi cgid dav dav_lock dav_fs vhost_alias speling rewrite log_config logio env setenvif mime status substitute autoindex asis negotiation dir imap actions userdir so unique_id version dumpio log_forensic reqtimeout socache_shmcb unixd slotmem_shm ratelimit remoteip lbmethod_bybusyness lbmethod_byrequests lbmethod_bytraffic lbmethod_heartbeat xml2enc" APACHE2_MPMS="worker" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4 sse4_1 sse4_2 ssse3" CURL_SSL="nss" ELIBC="glibc" FFTOOLS="cws2fws ffhash pktdumper sidxindex qt-faststart aviocat ismindex" GPSD_PROTOCOLS="aivdm sirf mtk3301 gpsclock superstar2 timing nmea" GRUB_PLATFORMS="pc multiboot efi coreboot efi-64" INPUT_DEVICES="keyboard mouse evdev wacom synaptics" KERNEL="linux" L10N="en_GB en en_US de_DE de" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer nlpsolver pdfimport wiki-publisher" LINGUAS="en_GB en en_US de_DE de" LLVM_TARGETS="X86 NVPTX" PHP_TARGETS="php5-6 php7-0 php7-1" POSTGRES_TARGETS="postgres9_6 postgres10" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4 python3_5 python3_6" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby23" SANE_BACKENDS="net hp" USERLAND="GNU" VIDEO_CARDS="vga intel i915 i965 fbdev vesa" XFCE_PLUGINS="clock multiload-nandhp power trash"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Thomas Beutin 2017-12-07 19:32:48 UTC]

g++ -c -O2 -g -pipe -ansi -Wall -Wno-unused -Wno-non-virtual-dtor -Wno-invalid-offsetof -Wno-sign-compare -Wno-unused -Wno-ctor-dtor-privacy -fvisibility-inlines-hidden -
fvisibility=hidden -DVBOX_HAVE_VISIBILITY_HIDDEN -DRT_USE_VISIBILITY_DEFAULT -fdiagnostics-show-option -Wno-delete-non-virtual-dtor -fPIC -Wno-write-strings -O -pthread -
m64 -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/java/src -I/include -I/include/linux -I/var/tmp/portage/app-emulation/vir
tualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/glue -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/bui
ld -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/obj/vboxjxpcom-gen/jdest -I/var/tmp/portage/app-emulation/virtualbox-
5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/build -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/ds -I/var/
tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/io -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/s
rc/libs/xpcom18a4/xpcom/base -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/components -I/var/tmp/portage/app-emulatio
n/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/threads -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/x
pcom/proxy/src -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/xpcom/reflect/xptcall/src -I/var/tmp/portage/app-emulation/vir
tualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/ipc/ipcd/client/src -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/ipc/ipcd/shared/src -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/ipc/ipcd/extensions/lock/src -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/ipc/ipcd/extensions/transmngr/src -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/ipc/ipcd/extensions/dconnect/src -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/ipc/ipcd/extensions/transmngr/common -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/bin/sdk/bindings/xpcom/include -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/bin/sdk/bindings/xpcom/include/nsprpub -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/bin/sdk/bindings/xpcom/include/string -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/bin/sdk/bindings/xpcom/include/xpcom -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/bin/sdk/bindings/xpcom/include/ipcd -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/java -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/obj/VBoxJXpcom/dtrace -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/include -I/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release -DVBOX -DVBOX_OSE -DVBOX_WITH_64_BITS_GUESTS -DVBOX_WITH_REM -DVBOX_WITH_RAW_MODE -DRT_OS_LINUX -D_FILE_OFFSET_BITS=64 -DRT_ARCH_AMD64 -D__AMD64__ -DVBOX_WITH_DEBUGGER -DVBOX_WITH_HARDENING -DRTPATH_APP_PRIVATE=\"/usr/share/virtualbox\" -DRTPATH_APP_PRIVATE_ARCH=\"/usr/lib64/virtualbox\" -DRTPATH_SHARED_LIBS=\"/usr/lib64/virtualbox\" -DRTPATH_APP_DOCS=\"\" -DMOZILLA_CLIENT=1 -DNDEBUG=1 -D_IMPL_NS_COM -DXPCOM_DLL_BASE=\"VBoxXPCOM\" -DMOZ_DLL_SUFFIX=\".so\" -DIN_RING3 -DVBOX_USE_IPRT_IN_XPCOM -DVBOX_WITH_XPCOM_NAMESPACE_CLEANUP -DMOZ_PRESERVE_PIC -DEXPORT_XPTI_API -DEXPORT_XPT_API -DVBOX_WITH_XPCOM -DOSTYPE=\"Linux2.6\" -DOSARCH=\"Linux\" -DXP_UNIX=1 -D_GNU_SOURCE -DHAVE_VISIBILITY_ATTRIBUTE=1 -DHAVE_VA_LIST_AS_ARRAY -DHAVE_VA_COPY -DVA_COPY\(a\,b\)=__builtin_va_copy\(a\,b\) -Wp,-MD,/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/obj/VBoxJXpcom/src/nsAppFileLocProviderProxy.o.dep -Wp,-MT,/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/obj/VBoxJXpcom/src/nsAppFileLocProviderProxy.o -Wp,-MP -o /var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/obj/VBoxJXpcom/src/nsAppFileLocProviderProxy.o /var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/java/src/nsAppFileLocProviderProxy.cpp
In file included from /var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/java/src/nsAppFileLocProviderProxy.cpp:38:0:
/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/src/libs/xpcom18a4/java/src/nsAppFileLocProviderProxy.h:42:17: fatal error: jni.h: No such file or directory
 #include "jni.h"
                 ^
compilation terminated.
kmk: *** [/var/tmp/portage/app-emulation/virtualbox-5.1.30/work/VirtualBox-5.1.30/out/linux.amd64/release/obj/VBoxJXpcom/src/nsAppFileLocProviderProxy.o] Error 1

[Comment 2 Thomas Beutin 2017-12-07 19:33:43 UTC]

Created attachment 508754 [details]
build.log (gzipped)

[Comment 3 Larry the Git Cow 2018-03-03 21:33:23 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fd215a94a75e0c9677f6b3c09c1c7b434bedec62

commit fd215a94a75e0c9677f6b3c09c1c7b434bedec62
Author:     James Le Cuirot <[e-mail]>
AuthorDate: 2018-03-03 21:32:36 +0000
Commit:     James Le Cuirot <[e-mail]>
CommitDate: 2018-03-03 21:32:36 +0000

    app-emulation/virtualbox: Fix broken Java VM dependencies
    
    virtual/jdk must go in DEPEND only and virtual/jre must go in RDEPEND
    only and subslot operators are not necessary.
    
    Closes: https://bugs.gentoo.org/580552
    Closes: https://bugs.gentoo.org/640214
    Closes: https://bugs.gentoo.org/645074
    Package-Manager: Portage-2.3.24, Repoman-2.3.6

 app-emulation/virtualbox/virtualbox-5.1.32.ebuild | 5 +++--
 app-emulation/virtualbox/virtualbox-5.1.34.ebuild | 5 +++--
 app-emulation/virtualbox/virtualbox-5.2.6.ebuild  | 5 +++--
 app-emulation/virtualbox/virtualbox-5.2.8.ebuild  | 5 +++--
 4 files changed, 12 insertions(+), 8 deletions(-)