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Bug 633358 - dev-ruby/rubygems-2.6.13 file collision with dev-lang/ruby-2.3.5 on $PREFIX/usr/bin/gem23
Summary: dev-ruby/rubygems-2.6.13 file collision with dev-lang/ruby-2.3.5 on $PREFIX/u...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Ruby Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2017-10-03 09:16 UTC by Martin Mokrejš
Modified: 2018-02-06 19:43 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Martin Mokrejš 2017-10-03 09:16:05 UTC
Hi,
  on Gentoo::RAP installation I get a file collision:

 * Detected file collision(s):
 * 
 *      /apps/gentoo/usr/bin/gem23
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-lang/ruby-2.3.5:2.3::gentoo
 *      /usr/bin/gem23
 * 
 * Package 'dev-ruby/rubygems-2.6.13' NOT merged due to file collisions.
 * If necessary, refer to your elog messages for the whole content of the
 * above message.
Comment 1 Martin Mokrejš 2017-10-03 09:17:56 UTC
$ emerge --info
Portage 2.3.6 (python 2.7.14-final-0, prefix/linux-standalone/amd64, gcc-6.3.0, glibc-2.24-r1, 2.6.32-696.3.2.el6.Bull.120.x86_64 x86_64)
=================================================================
System uname: Linux-2.6.32-696.3.2.el6.Bull.120.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2670_0_@_2.60GHz-with-redhat-6.4-Santiago
KiB Mem:   131942596 total,  19025744 free
KiB Swap:   65536128 total,  65389252 free
Timestamp of repository gentoo: Mon, 02 Oct 2017 18:00:01 +0000
sh bash 4.4_p12
ld GNU ld (Gentoo 2.27 p1.0) 2.27
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.1-r1::gentoo
dev-lang/python:          2.7.14::gentoo, 3.4.6::gentoo, 3.5.2::gentoo, 3.6.1-r1::gentoo
dev-util/cmake:           3.8.1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/sandbox:         2.10-r4::gentoo
sys-devel/autoconf:       2.69-r3::gentoo
sys-devel/automake:       1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.27::gentoo, 2.29.1::gentoo
sys-devel/gcc:            3.4.6-r2::gentoo, 4.1.2::gentoo, 4.2.4-r1::gentoo, 4.4.7::gentoo, 4.5.4::gentoo, 4.7.4::gentoo, 4.8.5::gentoo, 4.9.3::gentoo, 4.9.4::gentoo, 5.4.0-r3::gentoo, 6.3.0::gentoo, 7.1.0-r1::gentoo
sys-devel/gcc-config:     1.8_p20160608::rap
sys-devel/libtool:        2.4.6-r4::gentoo
sys-devel/make:           4.2.1-r1::gentoo
sys-kernel/linux-headers: 4.10::gentoo (virtual/os-headers)
sys-libs/glibc:           2.24-r1::gentoo
Repositories:

gentoo
    location: /apps/gentoo/usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    eclass-overrides: rap

name-gentoo
    location: /apps/gentoo/usr/local/portage
    masters: gentoo
    priority: 0
    eclass-overrides: rap

rap
    location: /apps/gentoo/usr/portage-stage
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/proj/android.git
    masters: gentoo
    eclass-overrides: rap

haskell
    location: /apps/gentoo/var/lib/layman/haskell
    masters: gentoo
    priority: 50
    eclass-overrides: rap

science
    location: /apps/gentoo/var/lib/layman/science
    masters: gentoo
    priority: 50
    eclass-overrides: rap

ACCEPT_KEYWORDS="amd64 ~amd64 ~amd64-linux"
ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x Intel-SDP OPERA-2014"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -O2 -pipe -march=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf"
CONFIG_PROTECT_MASK="/apps/gentoo/etc/gentoo-release /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -O2 -pipe -march=native -ftree-vectorize"
DISTDIR="/apps/gentoo/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news nostrip parallel-fetch preserve-libs protect-owned sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/apps/gentoo/usr/portage/packages"
PORTAGE_CONFIGROOT="/apps/gentoo/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/apps/gentoo/var/tmp"
USE="X alsa amd64 apache apache2 avx berkdb boost bzip2 cairo cgi cli coin cracklib crypt cryptlib curl cxx dbus device-mapper dhcp dri emboss encode fax fbcon ffmpeg fontconfig fortran gbm gd gdbm gimp glpk gnutls gtk hal hwdb iconv imaging innodb ithreads java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack lcms libnotify lm_sensors mad mmx modules mpi mpich2 mysql ncurses nfs nls nptl nptlonly nscd objc openmp openssl pcre pdf perl php png policykit polkit ppds pppd prefix python qt3support readline resolvconf seccomp server session sftp slideshow sndfile spell sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcl tcpd threads tiff tk truetype unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_US en_GB en cs" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby21 ruby22 ruby23 ruby24" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

$ emerge -pv dev-lang/ruby rubygems --backtrack=30000
!!! Section 'gentoo_prefix' in repos.conf has name different from repository name 'gentoo' set inside repository

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild   R    ] dev-lang/ruby-2.4.2:2.4::gentoo  USE="berkdb gdbm rdoc ssl tk -debug -doc -examples -ipv6 -jemalloc -libressl -rubytests -socks5 -static-libs -xemacs" 0 KiB
[ebuild  N     ] dev-ruby/rubygems-2.6.13::gentoo  USE="server {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB
[ebuild     U  ] virtual/rubygems-13::gentoo [12::gentoo] RUBY_TARGETS="ruby22* ruby23* ruby24* (-rbx) (-ruby20%) (-ruby21%*)" 0 KiB
[ebuild  N     ] dev-ruby/did_you_mean-1.1.2:2.4::gentoo  USE="{-test}" RUBY_TARGETS="ruby24" 0 KiB
[ebuild  N     ] dev-ruby/power_assert-1.1.0::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB
[ebuild  N     ] dev-ruby/minitest-5.10.3:5::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB
[ebuild  N     ] dev-ruby/xmlrpc-0.3.0::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby23 ruby24" 0 KiB
[ebuild  N     ] dev-ruby/test-unit-3.2.6:2::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB
[ebuild  N     ] dev-ruby/net-telnet-0.1.1-r1:1::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB
[ebuild     U  ] dev-ruby/rake-12.1.0::gentoo [12.0.0::gentoo] USE="-doc {-test}" RUBY_TARGETS="ruby22* ruby23* ruby24* (-ruby20%) (-ruby21%*)" 0 KiB
[ebuild  N     ] dev-ruby/json-2.1.0:2::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB
[ebuild   R    ] dev-ruby/racc-1.4.14::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22* ruby23* ruby24* (-ruby20%) (-ruby21%*)" 0 KiB
[ebuild   R    ] dev-ruby/kpeg-1.1.0:1::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22* ruby23* ruby24* (-ruby21%*)" 0 KiB
[ebuild  N     ] dev-ruby/rdoc-5.1.0::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby22 ruby23 ruby24" 0 KiB

Total: 14 packages (2 upgrades, 9 new, 3 reinstalls), Size of downloads: 0 KiB
Comment 2 Benda Xu gentoo-dev 2018-02-01 19:36:59 UTC
Does this bug persist with the newer versions of ruby?
Comment 3 Martin Mokrejš 2018-02-01 20:30:01 UTC
Interestingly it does not happen anymore if I have only ruby 2.4 and 2.5. ;)

$ emerge -pv ruby rdoc rubygems

[ebuild   R    ] dev-lang/ruby-2.5.0-r1:2.5::gentoo  USE="berkdb gdbm ssl tk -debug -doc -examples -ipv6 -jemalloc -libressl -rdoc -rubytests -socks5 -static-libs -xemacs" 0 KiB
[ebuild   R    ] dev-ruby/rubygems-2.7.4::gentoo  USE="server {-test}" RUBY_TARGETS="ruby24 ruby25 -ruby22 -ruby23" 0 KiB
[ebuild   R    ] dev-ruby/rdoc-6.0.1::gentoo  USE="-doc {-test}" RUBY_TARGETS="ruby24 ruby25 -ruby22 -ruby23" 0 KiB


$ equery files rubygems |  grep rdoc
/apps/gentoo/usr/lib64/ruby/site_ruby/2.4.0/rubygems/commands/rdoc_command.rb
/apps/gentoo/usr/lib64/ruby/site_ruby/2.4.0/rubygems/rdoc.rb
/apps/gentoo/usr/lib64/ruby/site_ruby/2.5.0/rubygems/commands/rdoc_command.rb
/apps/gentoo/usr/lib64/ruby/site_ruby/2.5.0/rubygems/rdoc.rb
$ equery files ruby |  grep rdoc
/apps/gentoo/usr/lib64/ruby/2.4.0/racc/rdoc
/apps/gentoo/usr/lib64/ruby/2.5.0/racc/rdoc
$ equery files rdoc |  grep rdoc
/apps/gentoo/usr/bin/rdoc-2
/apps/gentoo/usr/bin/rdoc24
/apps/gentoo/usr/bin/rdoc25
...



$ equery files rubygems |  grep gem
/apps/gentoo/etc/conf.d/gem_server
/apps/gentoo/etc/init.d/gem_server
/apps/gentoo/usr/bin/gem24
/apps/gentoo/usr/bin/gem25
$ equery files ruby |  grep gem
/apps/gentoo/usr/lib64/ruby/2.4.0/rubygems.rb
/apps/gentoo/usr/lib64/ruby/2.4.0/ubygems.rb
/apps/gentoo/usr/lib64/ruby/2.5.0/rubygems.rb


But after I enabled RUBY_TARGETS="ruby23"  while re-emerging dev-ruby/rubygems-2.7.4 I get:

 * Detected file collision(s):
 * 
 * 	/apps/gentoo/usr/bin/gem23
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-lang/ruby-2.3.6:2.3::gentoo
 * 	/usr/bin/gem23
 * 
 * Package 'dev-ruby/rubygems-2.7.4' NOT merged due to file collisions.
Comment 4 Larry the Git Cow gentoo-dev 2018-02-06 19:43:04 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8a0814b2281a6ebab82560fa5589eec9bf285a6c

commit 8a0814b2281a6ebab82560fa5589eec9bf285a6c
Author:     Benda Xu <heroxbd@gentoo.org>
AuthorDate: 2018-02-06 19:41:21 +0000
Commit:     Benda Xu <heroxbd@gentoo.org>
CommitDate: 2018-02-06 19:42:49 +0000

    dev-lang/ruby: support Prefix for 2.3.6.
    
      Minor ED update without revision bump. The similar fixes are already
      in 2.4 and 2.5.
    
    Reported-By: Martin Mokrejš
    Closes: https://bugs.gentoo.org/633358
    
    Package-Manager: Portage-2.3.24, Repoman-2.3.6

 dev-lang/ruby/ruby-2.3.6.ebuild | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)