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Bug 632364 - =dev-lang/R-3.5.1 version bump
Summary: =dev-lang/R-3.5.1 version bump
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Mathematics related packages
URL:
Whiteboard:
Keywords:
: 640786 (view as bug list)
Depends on:
Blocks:
 
Reported: 2017-09-29 12:28 UTC by Neil
Modified: 2018-07-04 00:10 UTC (History)
6 users (show)

See Also:
Package list:
Runtime testing required: ---


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Description Neil 2017-09-29 12:28:50 UTC
New version of R-3.4.2 released yesterday, see https://stat.ethz.ch/pipermail/r-announce/2017/000619.html

Bumped locally and its built fine on ~amd64, limited testing but no problems so far.
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2017-12-12 08:55:33 UTC
*** Bug 640786 has been marked as a duplicate of this bug. ***
Comment 2 Neil 2018-03-19 09:15:45 UTC
=dev-lang/R-3.4.4 released 2018-03-15, see announcement on R-announce mailing list at...

https://stat.ethz.ch/pipermail/r-announce/2018/000626.html
Comment 3 Daniel M. Weeks 2018-03-19 16:43:10 UTC
For those who cannot wait, I have newer builds of R (including 3.4.4) in the junkdrawer overlay.
Comment 4 Neil 2018-03-19 16:58:20 UTC
D'oh! Forgot to add a local bump installs and is working fine for me on two systems.
Comment 5 Neil 2018-04-25 05:57:59 UTC
=dev-lang/R-3.5.0 released with significant changes under the hood that improve performance.  Bumped locally yesterday and seems ok here (so far!).

Announcement at https://stat.ethz.ch/pipermail/r-announce/2018/000628.html

Be good to see this bumped in portage if possible.
Comment 6 John Dough 2018-06-27 03:29:24 UTC
What is the status of this bug? The R ebuild in portage has not been updated in a long while, same for rstudio. Is there an issue that I am not aware of that is preventing this from being updated?
Comment 7 Neil 2018-06-27 06:29:10 UTC
Good question.

Until such time as Portage is updated I can recommend bumping locally for =dev-lang/R-3.5.0, see https://wiki.gentoo.org/wiki/Custom_repository

RStudio ebuilds are in my experience more fickle when bumping locally.  The most recent bug report is #652116 which requests bumping to =sci-mathematics/rstudio-1.1.442 (although the current release is 1.1.453 https://www.rstudio.com/products/rstudio/download/#download).

I don't use RStudio myself though (Emacs + ESS instead) so don't keep up to date nor bump RStudio locally, but if you can update locally then report back to the above bug and hopefully Portage will see an update from the asignee (and someone on sci-mathematics@gentoo.org who this has been assigned to will address this bug too).
Comment 8 Daniel M. Weeks 2018-06-27 17:45:02 UTC
(In reply to John Dough from comment #6)
> What is the status of this bug? The R ebuild in portage has not been updated
> in a long while, same for rstudio. Is there an issue that I am not aware of
> that is preventing this from being updated?

John, I've just updated the version of dev-lang/R in the junkdrawer overlay to 3.5.0. I'll keep it synced with upstream until newer versions are in portage.

I'll look into rstudio but as Neil pointed out, it has many more dependencies.
Comment 9 Mark Wright gentoo-dev 2018-06-28 10:08:56 UTC
Thanks for the reminder, I'm working on bumping R.
For sci-mathematics/rstudio please discuss it in:
https://bugs.gentoo.org/652116
Comment 10 Neil 2018-07-02 19:01:41 UTC
I know zero days are generally inappropriate but R-3.5.1 was released today and I figured if ebuild is being updated may as well go with the latest...

https://stat.ethz.ch/pipermail/r-announce/2018/000630.html
Comment 11 Daniel M. Weeks 2018-07-02 20:49:12 UTC
(In reply to Neil from comment #10)
> I know zero days are generally inappropriate but R-3.5.1 was released today
> and I figured if ebuild is being updated may as well go with the latest...
> 
> https://stat.ethz.ch/pipermail/r-announce/2018/000630.html

Just edit the version in the bug title.

I have pushed 3.5.1 to the junkdrawer overlay.
Comment 12 Larry the Git Cow gentoo-dev 2018-07-03 00:48:32 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c13cb5aef5770ba3e947fb4891b955ce1ebd6b71

commit c13cb5aef5770ba3e947fb4891b955ce1ebd6b71
Author:     Mark Wright <gienah@gentoo.org>
AuthorDate: 2018-07-02 11:28:58 +0000
Commit:     Mark Wright <gienah@gentoo.org>
CommitDate: 2018-07-03 00:47:24 +0000

    dev-lang/R: Bump to 3.5.1 RC
    
    Thanks to Neil for reporting, John Dough and Daniel M. Weeks for commenting.
    Bug: https://bugs.gentoo.org/632364
    Package-Manager: Portage-2.3.41, Repoman-2.3.9

 dev-lang/R/Manifest          |   1 +
 dev-lang/R/R-3.5.1_rc.ebuild | 207 +++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 208 insertions(+)
Comment 13 Marcel Schilling 2018-07-03 12:16:18 UTC
After emerge --sync today, emerge --deep --with-bdeps=y --update --newuse tries to merge dev-lang/R-3.5.1_rc but fails with 

!!! Fetched file: R-patched_2018-06-29.tar.gz VERIFY FAILED!
!!! Reason: Filesize does not match recorded size
!!! Got:      29775467
!!! Expected: 29775566
Refetching... File renamed to '/var/portage/distfiles/R-patched_2018-06-29.tar.gz._checksum_failure_.52uk5fcl'
Comment 14 Larry the Git Cow gentoo-dev 2018-07-04 00:10:19 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a95fb2c43f530843ab8db95718278e2539f77f62

commit a95fb2c43f530843ab8db95718278e2539f77f62
Author:     Mark Wright <gienah@gentoo.org>
AuthorDate: 2018-07-04 00:09:32 +0000
Commit:     Mark Wright <gienah@gentoo.org>
CommitDate: 2018-07-04 00:09:32 +0000

    dev-lang/R: Bump to 3.5.1
    
    Thanks to Neil for reporting, Daniel M. Weeks, John Dough and Marcel Schilling
    for commenting.
    
    Closes: https://bugs.gentoo.org/632364
    Closes: https://bugs.gentoo.org/660294
    Package-Manager: Portage-2.3.41, Repoman-2.3.9

 dev-lang/R/Manifest                              | 2 +-
 dev-lang/R/{R-3.5.1_rc.ebuild => R-3.5.1.ebuild} | 5 +----
 2 files changed, 2 insertions(+), 5 deletions(-)