Created attachment 492930 [details] build.log 2.2.9 is fine though, but 2.2.6 is "stable", so maintainer may wish to progress to stabilization and cleanup. Keywords for sci-biology/bowtie: | | u | | a a p s a n r | n | | l m h i p p r m m i i s | e u s | r | p d a p a p c a x m i 6 o s 3 | a s l | e | h 6 r p 6 p 6 r 8 6 p 8 s c 9 s | p e o | p | a 4 m a 4 c 4 c 6 4 s k 2 v 0 h | i d t | o ---------+---------------------------------+-------+------- 1.1.2 | o + o o o o o o + o o o o o o o | 5 o 1 | gentoo 1.1.2-r1 | o ~ o o o o o o ~ o o o o o o o | 6 o | gentoo ---------+---------------------------------+-------+------- 2.2.6 | o + o o o o o o + o o o o o o o | 5 o 2 | gentoo 2.2.9 | o ~ o o o o o o ~ o o o o o o o | 6 o | gentoo This is probably related to dev-cpp/tbb-2017.20161128, which is now stable since April Keywords for dev-cpp/tbb: | | u | | a a p s a n r | n | | l m h i p p r m m i i s | e u s | r | p d a p a p c a x m i 6 o s 3 | a s l | e | h 6 r p 6 p 6 r 8 6 p 8 s c 9 s | p e o | p | a 4 m a 4 c 4 c 6 4 s k 2 v 0 h | i d t | o --------------+---------------------------------+-------+------- 4.3.20150611 | o + ~ ~ o + + o + o o o o o o o | 5 # 0 | gentoo 4.4.20160803 | ~ ~ ~ ~ o ~ ~ o ~ o o o o o o o | 6 # | gentoo 2017.20161128 | ~ + ~ ~ o + + o + o o o o o o o | 6 o | gentoo 2017.20170226 | ~ ~ ~ ~ ~ ~ ~ o ~ ~ o o o o o o | 6 o | gentoo /usr/include/tbb/task.h: In instantiation of ‘tbb::task* tbb::internal::function_task<F>::execute() [with F = multiseedSearchWorker]’: bt2_search.cpp:4756:1: required from here /usr/include/tbb/task.h:926:13: error: no match for call to ‘(const multiseedSearchWorker) ()’ my_func(); ^ bt2_search.cpp:2795:6: note: candidate: void multiseedSearchWorker::operator()() <near match> void multiseedSearchWorker::operator()() { ^ bt2_search.cpp:2795:6: note: passing ‘const multiseedSearchWorker*’ as ‘this’ argument discards qualifiers In file included from /usr/include/tbb/task_group.h:24:0, from threading.h:28, from ds.h:30, from sequence_io.h:28, from multikey_qsort.h:24, from diff_sample.h:26, from blockwise_sa.h:29, from bt2_idx.h:42, from bt2_search.cpp:33: /usr/include/tbb/task.h: In instantiation of ‘tbb::task* tbb::internal::function_task<F>::execute() [with F = multiseedSearchWorker_2p5]’: bt2_search.cpp:4756:1: required from here /usr/include/tbb/task.h:926:13: error: no match for call to ‘(const multiseedSearchWorker_2p5) ()’ my_func(); ^ bt2_search.cpp:3899:6: note: candidate: void multiseedSearchWorker_2p5::operator()() <near match> void multiseedSearchWorker_2p5::operator()() { ^
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6d8d74d327137358ffb5e4dad142b9c8b280f71c commit 6d8d74d327137358ffb5e4dad142b9c8b280f71c Author: David Seifert <soap@gentoo.org> AuthorDate: 2017-12-25 09:57:08 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2017-12-25 16:08:50 +0000 sci-biology/bowtie: Remove old Closes: https://bugs.gentoo.org/630140 Package-Manager: Portage-2.3.19, Repoman-2.3.6 Closes: https://github.com/gentoo/gentoo/pull/6626 sci-biology/bowtie/Manifest | 1 - sci-biology/bowtie/bowtie-1.1.2.ebuild | 54 ------------------------------ sci-biology/bowtie/bowtie-2.2.6.ebuild | 60 ---------------------------------- 3 files changed, 115 deletions(-)
