Created attachment 485372 [details] build.log make[1]: Entering directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/bfast' x86_64-pc-linux-gnu-gcc -march=native -mtune=native -O2 -pipe -fgnu89-inline -Wall -pthread -Wl,-O1 -Wl,--as-needed -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o Bfa stBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lm -lbz2 -lz make[1]: Leaving directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/bfast' Making check in butil make[1]: Entering directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/butil' make[1]: Nothing to be done for 'check'. make[1]: Leaving directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/butil' Making check in scripts make[1]: Entering directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/scripts' make[1]: Nothing to be done for 'check'. make[1]: Leaving directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/scripts' Making check in tests make[1]: Entering directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/tests' make check-TESTS make[2]: Entering directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/tests' make[3]: Entering directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/tests' /bin/sh: /bin/sh: cannot execute binary file make[3]: *** [Makefile:669: test.index.sh.log] Error 126 make[3]: *** Waiting for unfinished jobs.... /bin/sh: /bin/sh: cannot execute binary file /bin/sh: /bin/sh: cannot execute binary file make[3]: *** [Makefile:655: test.initialize.sh.log] Error 126 make[3]: *** [Makefile:662: test.fasta2brg.sh.log] Error 126 make[3]: Leaving directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/tests' make[2]: *** [Makefile:637: check-TESTS] Error 2 make[2]: Leaving directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/tests' make[1]: *** [Makefile:756: check-am] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-biology/bfast-0.7.0a/work/bfast-0.7.0a/tests' make: *** [Makefile:428: check-recursive] Error 1
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9fe8b408c10d5ec964cf93f92926b014fe4697f1 commit 9fe8b408c10d5ec964cf93f92926b014fe4697f1 Author: David Seifert <soap@gentoo.org> AuthorDate: 2021-03-13 21:07:14 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2021-03-13 21:07:14 +0000 sci-biology/bfast: Port to EAPI 7 Closes: https://bugs.gentoo.org/625490 Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/bfast/bfast-0.7.0a.ebuild | 39 ++++------- .../bfast/files/bfast-0.7.0a-C99-inline.patch | 74 ++++++++++++++++++++ .../bfast/files/bfast-0.7.0a-autotools.patch | 41 +++++++++++ .../bfast/files/bfast-0.7.0a-test-sourcing.patch | 79 ++++++++++++++++++++++ 4 files changed, 207 insertions(+), 26 deletions(-)
