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Bug 604466 - net-mail/cyrus-imapd[sieve]: libpcreposix.so symbol clash with glibc
Summary: net-mail/cyrus-imapd[sieve]: libpcreposix.so symbol clash with glibc
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Net-Mail Packages
URL: https://bugs.exim.org/show_bug.cgi?id...
Whiteboard:
Keywords:
Depends on:
Blocks: 626386
  Show dependency tree
 
Reported: 2017-01-03 00:11 UTC by Maciej S. Szmigiero
Modified: 2018-03-12 12:10 UTC (History)
9 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
pcre3 pcreposix patch (pcreposix.patch,937 bytes, patch)
2017-02-22 13:16 UTC, Ruediger Hahn
Details | Diff
net-mail/cyrus-imapd build.log (build.log,324.41 KB, text/plain)
2017-03-29 04:43 UTC, Shaun Bouckaert
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Maciej S. Szmigiero 2017-01-03 00:11:44 UTC
libpcreposix.so from dev-libs/libpcre implements POSIX regex functions
(regcomp, regexec, regerror, regfree), just like glibc.

Unfortunately, these two implementations aren't binary-compatible due to,
at least, different size of regex_t caller-provided pattern buffer storage area.

One of victims of this incompatibility is net-mail/cyrus-imapd[sieve], which
crashes on any regex usage (since it compiles against libpcre's implementation
for more features, but ends with being linked to glibc's one).

Simple way to reproduce the crash it to run:
 echo 'require "regex"; if header :regex "To" ".*foo@bar?" { stop; }' >/tmp/stest; /usr/lib/cyrus/sievec /tmp/stest /tmp/stest.out

Result:
*** Error in `/usr/lib/cyrus/sievec': free(): invalid next size (fast): 0x000055ecab45eba0 ***

Looks like exim also might be a victim:
https://bugs.exim.org/show_bug.cgi?id=1830

Debian uses a patch to libpcre to rename these functions in libpcreposix.so and
redirect callers to these new names for code that includes libpcre's pcreposix.h
header:
https://sources.debian.net/patches/pcre3/2:8.39-2/pcreposix.patch/

I can confirm that with this patch applied to libpcre and net-mail/cyrus-imapd
rebuilt it no longer aborts when calling regex functions.
Comment 1 Bill Prendergast 2017-01-14 20:02:03 UTC
https://bugs.exim.org/show_bug.cgi?id=1830
This is actually the bug for pcre it's self (pcre is using the same bugzilla system as Exim).
From comments in that ticket Debian has been applying their patch for a long time. The original Debian bug report 22525 is no longer accessible.

*** Error in `/usr/lib/cyrus/sievec': corrupted double-linked list: 0x0804d8e8 ***
======= Backtrace: =========
/lib/libc.so.6(+0x687a6)[0xb7e1f7a6]
/lib/libc.so.6(+0x6e65d)[0xb7e2565d]
/lib/libc.so.6(+0x70a66)[0xb7e27a66]
/lib/libc.so.6(__libc_malloc+0x5f)[0xb7e28c37]
/lib/libc.so.6(+0xcb33a)[0xb7e8233a]
/lib/libc.so.6(regcomp+0xb4)[0xb7e83297]
/usr/lib/libcyrus_sieve.so.0(+0xd354)[0xb7fac354]
/usr/lib/libcyrus_sieve.so.0(+0xd8e4)[0xb7fac8e4]
/usr/lib/libcyrus_sieve.so.0(+0x11155)[0xb7fb0155]
/usr/lib/libcyrus_sieve.so.0(sieve_script_parse+0xc8)[0xb7fab381]
/usr/lib/cyrus/sievec[0x8049081]
/lib/libc.so.6(__libc_start_main+0xf4)[0xb7dcf49b]
/usr/lib/cyrus/sievec[0x80492a6]
======= Memory map: ========
#### trimmed ####

Program received signal SIGABRT, Aborted.
0xb7fdbbcd in __kernel_vsyscall ()
(gdb) bt
#0  0xb7fdbbcd in __kernel_vsyscall ()
#1  0xb7de2f38 in raise () from /lib/libc.so.6
#2  0xb7de4471 in abort () from /lib/libc.so.6
#3  0xb7e1f7ab in __libc_message () from /lib/libc.so.6
#4  0xb7e2565d in malloc_printerr () from /lib/libc.so.6
#5  0xb7e27a66 in _int_malloc () from /lib/libc.so.6
#6  0xb7e28c37 in malloc () from /lib/libc.so.6
#7  0xb7e8233a in re_compile_internal () from /lib/libc.so.6
#8  0xb7e83297 in regcomp () from /lib/libc.so.6
#9  0xb7fac354 in verify_regex (parse_script=parse_script@entry=0x804dcd8, s=0x8053b40 ".*some sieve regex I don't want to share", cflags=97, cflags@entry=33) at sieve/sieve.y:1663
#10 0xb7fac8e4 in verify_regexs (parse_script=parse_script@entry=0x804dcd8, comp=<optimized out>, sa=<optimized out>, sa=<optimized out>) at sieve/sieve.y:1683
#11 0xb7fb0155 in sieveparse (parse_script=0x804dcd8) at sieve/sieve.y:568
#12 0xb7fab381 in sieve_script_parse (interp=0x804c7d8, script=script@entry=0x804c008, script_context=script_context@entry=0xbfffe9ec, ret=ret@entry=0xbfffe9e8) at sieve/script.c:224
#13 0x08049081 in is_script_parsable (ret=0xbfffe9e0, errstr=<synthetic pointer>, stream=0x804c008) at sieve/sievec.c:217
#14 main (argc=3, argv=0xbfffeab4) at sieve/sievec.c:105
Comment 2 Ruediger Hahn 2017-02-22 13:16:22 UTC
Created attachment 464672 [details, diff]
pcre3 pcreposix patch
Comment 3 Ruediger Hahn 2017-02-22 13:17:46 UTC
Comment on attachment 464672 [details, diff]
pcre3 pcreposix patch

I am having exactly the same problem: cyrus-imapd segfaults when it gets to a sieve script which contains regular expressions. Even compiling a sieve script using sievec results in a segfault.

I was able to fix all problems with cyrus and sieve by applying the attached patch which I got from this site: https://sources.debian.net/patches/pcre3/2:8.39-2/pcreposix.patch/

Ruediger
Comment 4 SpanKY gentoo-dev 2017-02-22 16:38:06 UTC
this is an issue to be resolved upstream.  i don't think we should be renaming symbols on them and breaking their ABI.

any app that uses pcreposix.h better be linking against -lpcreposix.  using the header but not linking against that lib is an error.
Comment 5 Ruediger Hahn 2017-02-23 18:43:45 UTC
I am not sure if I understand you right when you say that "this is an issue to be resolved upstream". Do you mean the problem is with the cyrus-imapd? If so, could you please throw some light upon this problem? I made some comments in the cyrus issue tracker https://github.com/cyrusimap/cyrus-imapd/issues/1848 but now I am not sure if I was right.

Thank you in advance

Ruediger
Comment 6 SpanKY gentoo-dev 2017-02-23 19:12:55 UTC
(In reply to Ruediger Hahn from comment #5)

glancing at the source, it looks like a bug in cyrus-imapd.  i'll comment on the upstream bug.
Comment 7 SpanKY gentoo-dev 2017-02-23 19:21:16 UTC
(In reply to SpanKY from comment #6)

nm, i was looking at unittest files.  the source includes pcreposix.h explicitly, and then also links against -lpcreposix.  that means those regex symbols will be interposed at runtime over the glibc ones.

double check which programs are actually linked against libpcreposix.  something like:
  qlist net-mail/cyrus-imapd | xargs scanelf -qn
Comment 8 Shaun Bouckaert 2017-03-29 04:25:19 UTC
> (In reply to SpanKY from comment #6)
> 
> nm, i was looking at unittest files.  the source includes pcreposix.h
> explicitly, and then also links against -lpcreposix.  that means those regex
> symbols will be interposed at runtime over the glibc ones.
> 
> double check which programs are actually linked against libpcreposix. 
> something like:
>   qlist net-mail/cyrus-imapd | xargs scanelf -qn

I'm effected by this (net-mail/cyrus-imapd-2.5.10, use: berkdb clamav http pam perl server sieve sqlite ssl) and can provide the following information if it's helpful

$ ldd /usr/lib64/cyrus/sievec                                                                                                                            
        linux-vdso.so.1 (0x00007ffff6176000)
        libcyrus_sieve.so.0 => /usr/lib64/libcyrus_sieve.so.0 (0x00007fd6f9114000)
        libcyrus_min.so.0 => /usr/lib64/libcyrus_min.so.0 (0x00007fd6f8eda000)                                                                                        
        libpthread.so.0 => /lib64/libpthread.so.0 (0x00007fd6f8cbe000)
        libc.so.6 => /lib64/libc.so.6 (0x00007fd6f8925000)                                                                                                            
        libcyrus_com_err.so.0 => /usr/lib64/libcyrus_com_err.so.0 (0x00007fd6f8722000)
        libcyrus.so.0 => /usr/lib64/libcyrus.so.0 (0x00007fd6f83e9000)
        libcrypto.so.1.0.0 => /usr/lib64/libcrypto.so.1.0.0 (0x00007fd6f7fa6000)
        libpcreposix.so.0 => /usr/lib64/libpcreposix.so.0 (0x00007fd6f7da3000)
        libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00007fd6f7a3e000)
        libical.so.1 => /usr/lib64/libical.so.1 (0x00007fd6f77d8000)                                                                                                  
        libicalss.so.1 => /usr/lib64/libicalss.so.1 (0x00007fd6f75bf000)
        libicalvcal.so.1 => /usr/lib64/libicalvcal.so.1 (0x00007fd6f73a9000)                                                                                          
        libjansson.so.4 => /usr/lib64/libjansson.so.4 (0x00007fd6f719c000)                                                                                            
        libz.so.1 => /lib64/libz.so.1 (0x00007fd6f6f85000)
        /lib64/ld-linux-x86-64.so.2 (0x00007fd6f9335000)                                                                                                              
        libsasl2.so.3 => /usr/lib64/libsasl2.so.3 (0x00007fd6f6d67000)
        libssl.so.1.0.0 => /usr/lib64/libssl.so.1.0.0 (0x00007fd6f6af8000)
        libdb-5.3.so => /usr/lib64/libdb-5.3.so (0x00007fd6f6739000)
        libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x00007fd6f6425000)
        libdl.so.2 => /lib64/libdl.so.2 (0x00007fd6f6221000)
        libpcre.so.1 => /lib64/libpcre.so.1 (0x00007fd6f5faf000)
        libm.so.6 => /lib64/libm.so.6 (0x00007fd6f5cb3000)

$ scanelf -qn /usr/lib64/cyrus/sievec
libcyrus_sieve.so.0,libcyrus_min.so.0,libpthread.so.0,libc.so.6  /usr/lib64/cyrus/sievec

$ qlist net-mail/cyrus-imapd | xargs scanelf -qn | grep libpcreposix
libcyrus_com_err.so.0,libcyrus_min.so.0,libcyrus.so.0,libpthread.so.0,libcrypto.so.1.0.0,libpcreposix.so.0,libc.so.6  /usr/lib64/libcyrus_sieve.so.0.0.0
libxml2.so.2,libical.so.1,libicalss.so.1,libicalvcal.so.1,libpthread.so.0,libjansson.so.4,libpcreposix.so.0,libz.so.1,libc.so.6  /usr/lib64/libcyrus_min.so.0.0.0
libcyrus_com_err.so.0,libcyrus_min.so.0,libcyrus.so.0,libpthread.so.0,libcrypto.so.1.0.0,libpcreposix.so.0,libc.so.6  /usr/lib64/libcyrus_sieve.so
libcyrus_com_err.so.0,libcyrus_min.so.0,libcyrus.so.0,libpthread.so.0,libcrypto.so.1.0.0,libpcreposix.so.0,libc.so.6  /usr/lib64/libcyrus_sieve.so.0
libxml2.so.2,libical.so.1,libicalss.so.1,libicalvcal.so.1,libpthread.so.0,libjansson.so.4,libpcreposix.so.0,libz.so.1,libc.so.6  /usr/lib64/libcyrus_min.so
libxml2.so.2,libical.so.1,libicalss.so.1,libicalvcal.so.1,libpthread.so.0,libjansson.so.4,libpcreposix.so.0,libz.so.1,libc.so.6  /usr/lib64/libcyrus_min.so.0
Comment 9 Shaun Bouckaert 2017-03-29 04:43:55 UTC
Created attachment 468556 [details]
net-mail/cyrus-imapd build.log

The build.log from a build of cyrus-imapd
Comment 10 Guillaume Castagnino 2017-06-09 14:33:16 UTC
I have the same problem with cyrus-imapd-3.0.1, but it breaks much more than just sieve. All processes crashes with the same backtrace as in comment #1: lmtpd, imapd, reconstruct… just make cyrus-imapd unusable.

Using the pcreposix patch above from debian fixes all the issues (after rebuilding all packages relying on libpcre of course)
Comment 11 markus 2017-06-14 12:28:16 UTC
hi all!

TL;DR:

First, this a me too! 

Second, though having no deep insight in what is actually going wrong: filtering --as-needed alters linking in a way that both sievec of 2.5 and much of 3.0.1 doesnt't crash with gentoo's unpatched libpcre.


Long Version:

On my System there are more binaries than cyrus' linked with libpcreposix.  These usually don't crash using Gentoos unpatched libpcre. Having learned that the order of libraries when linking determines which (versions of) symbols are found, I believe I've observed that binaries that don't crash link libpreposix.so before libc.so:

$ldd /usr/sbin/pcretest
[...]
  libpcreposix.so.0 => /usr/lib64/libpcreposix.so.0 (0x00007feb1ae70000)
[...]
  libc.so.6 => /lib64/libc.so.6 (0x00007feb1a655000)

Whereas _all_ binaries form cyrus-imapd 2.5/3.0 that link libpcreposix seem to do it the other way round:

$ldd sievec
[...]
  libc.so.6 => /lib64/libc.so.6
[...]
  libpcreposix.so.0 => /usr/lib64/libpcreposix.so.0

This my vague idea of an issue in the process of linking cyrus' binaries. I tried playing around with cyrus' build system without any previous knowledge of autotools: it didn't like me:(

However, filtering --as-nedded in the ebuild as decribed here: https://wiki.gentoo.org/wiki/Project:Quality_Assurance/As-needed 
prevents the crashes on my site. Furthermore the order of linking changes:

without --as-needed:
$ldd sievec
[...]
  libpcreposix.so.0 => /usr/lib64/libpcreposix.so.0
[...]
  libc.so.6 => /lib64/libc.so.6

No further insights, sorry....

Markus
Comment 12 Vlad 2017-07-15 10:30:22 UTC
I can confirm, that filtering as-needed flag makes at least sievec working (only tested with cyrus-imapd-3.0.2).
Comment 13 Stefan Briesenick 2017-08-31 16:13:45 UTC
filtering --as-needed works also for cyrus-imapd-2.5.11.

Please revbump. ty!
Comment 14 Ruediger Hahn 2017-11-20 11:57:17 UTC
Wouldn't it make sense to add this flag to the cyrus-imapd ebuild then?
Yesterday I wanted to upgrade to 3.0.4 and everything just crashed. Because I didn't have the time to check for the reason I reverted to 2.5.10 and a patched library.

This evening I will try again with the suggested filter.
Comment 15 Thomas Deutschmann (RETIRED) gentoo-dev 2017-11-20 18:49:09 UTC
Assigning to net-mail/cyrus-imapd maintainer.
Comment 16 Larry the Git Cow gentoo-dev 2018-01-22 14:21:01 UTC
The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7c8e1ea5dacdafacb4cf4d9f811a9a3146970f5c

commit 7c8e1ea5dacdafacb4cf4d9f811a9a3146970f5c
Author:     Eray Aslan <eras@gentoo.org>
AuthorDate: 2018-01-22 14:20:45 +0000
Commit:     Eray Aslan <eras@gentoo.org>
CommitDate: 2018-01-22 14:20:45 +0000

    net-mail/cyrus-imapd: bump to 3.0.5
    
    Filter --as-needed for working sieve implementation.  Should
    really be resolved at toolchain level
    Bug: https://bugs.gentoo.org/604466
    Package-Manager: Portage-2.3.20, Repoman-2.3.6

 net-mail/cyrus-imapd/Manifest                 |   1 +
 net-mail/cyrus-imapd/cyrus-imapd-3.0.5.ebuild | 221 ++++++++++++++++++++++++++
 2 files changed, 222 insertions(+)}
Comment 17 Eray Aslan gentoo-dev 2018-01-22 14:24:12 UTC
I fail to see how filtering anything during cyrus-imapd build is the correct solution here.  Toolchain guys really need to sort this out.

But please check net-mail/cyrus-imapd-3.0.5 for an as-needed filtered build.
Comment 18 J. Roeleveld 2018-03-09 11:09:16 UTC
cyrus-imapd-3.0.5 works here with sieve-filtering enabled and being used.
No manual patches were required
Comment 19 Maciej S. Szmigiero 2018-03-12 12:10:05 UTC
I can confirm that now 3.0.5 no longer crashes without a patch to libpcre.
Closing the bug now.