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Bug 596290 - sci-physics/root-6.04.06: IncrementalExecutor::executeFunction: symbol '_ZN5cling7runtime6gClingE' unresolved while linking [cling interface function]!
Summary: sci-physics/root-6.04.06: IncrementalExecutor::executeFunction: symbol '_ZN5c...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Andrew Savchenko
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-10-05 21:30 UTC by koenigrollo
Modified: 2017-12-15 12:01 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge --info '=sci-physics/root-6.04.06::gentoo' (emerge_info,6.40 KB, text/plain)
2016-10-05 21:30 UTC, koenigrollo
Details
build log part 1 of 5 (build.log00,986.33 KB, application/octet-stream)
2016-10-16 19:31 UTC, koenigrollo
Details
build log part 2 of 5 (build.log01,986.33 KB, text/plain)
2016-10-16 19:32 UTC, koenigrollo
Details
build log part 3 of 5 (build.log02,986.33 KB, text/plain)
2016-10-16 19:33 UTC, koenigrollo
Details
build log part 4 of 5 (build.log03,986.33 KB, text/plain)
2016-10-16 19:34 UTC, koenigrollo
Details
build log part 5 of 5 (build.log04,940.84 KB, text/plain)
2016-10-16 19:35 UTC, koenigrollo
Details

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Description koenigrollo 2016-10-05 21:30:26 UTC
Created attachment 449284 [details]
emerge --info '=sci-physics/root-6.04.06::gentoo'

Probably due to an upgrade of clang the rebuild of sci-physics/root failed.
sys-devel/llvm-3.5.0 -> sys-devel/llvm-3.7.1-r3
sys-devel/clang-3.5.0-r100 -> sys-devel/clang-3.7.1-r100


Tail of build.log:
   ============================================================
   ===                ROOT BUILD SUCCESSFUL.                ===
   === Run 'make install' now.                              ===
   ============================================================
Installing binaries in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/bin
Installing libraries in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/lib64/root
Installing headers in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/include/root
Installing /var/tmp/portage/sci-physics/root-6.04.06/work/root-6.04.06/main/src/rmain.cxx in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/include/root
Installing icons in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/root/icons
Installing fonts in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/root/fonts
Installing misc docs in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/doc/root-6.04.06
Installing tutorials in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/doc/root-6.04.06/examples/tutorials
Installing tests in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/doc/root-6.04.06/examples/tests
Installing macros in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/root/macros
Installing man(1) pages in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/man/man1
Installing config files in /var/tmp/portage/sci-physics/root-6.04.06/image//etc/root
Installing Autoconf macro in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/aclocal
Installing Emacs Lisp library in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/share/emacs/site-lisp
Installing GDML conversion scripts in /var/tmp/portage/sci-physics/root-6.04.06/image//usr/lib64/root
input_line_1:1:10: fatal error: file '/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/new' modified since it was first processed
#include <new>
         ^

Processing hsimple.C...
IncrementalExecutor::executeFunction: symbol '_ZN5cling7runtime6gClingE' unresolved while linking [cling interface function]!
You are probably missing the definition of cling::runtime::gCling
Maybe you need to load the corresponding shared library?
Makefile:1150: recipe for target 'install' failed
make: *** [install] Error 1
 * ERROR: sci-physics/root-6.04.06::gentoo failed (install phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-physics/root-6.04.06::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-physics/root-6.04.06::gentoo'`.
 * The complete build log is located at '/var/tmp/portage/sci-physics/root-6.04.06/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-physics/root-6.04.06/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-physics/root-6.04.06/work/root-6.04.06'
 * S: '/var/tmp/portage/sci-physics/root-6.04.06/work/root-6.04.06'


A side-effect is that emerge --depclean cannot resolve the dependancies:
 * Dependencies could not be completely resolved due to
 * the following required packages not being installed:
 * 
 *   >=sys-devel/clang-3.4:0/3.5= pulled in by:
 *     sci-physics/root-6.04.06
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2016-10-15 11:45:02 UTC
Please attach the entire build log to this bug report.
Comment 2 koenigrollo 2016-10-16 19:31:52 UTC
Created attachment 450466 [details]
build log part 1 of 5
Comment 3 koenigrollo 2016-10-16 19:32:43 UTC
Created attachment 450468 [details]
build log part 2 of 5
Comment 4 koenigrollo 2016-10-16 19:33:29 UTC
Created attachment 450470 [details]
build log part 3 of 5
Comment 5 koenigrollo 2016-10-16 19:34:31 UTC
Created attachment 450472 [details]
build log part 4 of 5
Comment 6 koenigrollo 2016-10-16 19:35:31 UTC
Created attachment 450474 [details]
build log part 5 of 5
Comment 7 Andrew Savchenko gentoo-dev 2016-12-05 22:00:41 UTC
Next time please just compress log (e.g. with xz -9)e, rather then split it and upload numerous parts.

Please post ouptut of `gcc-config -l`.
Comment 8 Andrew Savchenko gentoo-dev 2016-12-22 10:58:56 UTC
*** Bug 599274 has been marked as a duplicate of this bug. ***
Comment 9 koenigrollo 2016-12-22 14:31:52 UTC
Output of gcc-config -l :
[1] x86_64-pc-linux-gnu-4.9.3 *

After an update including icu (from icu-57.1 to icu-58.1-r1) I could build sci-physics/root-6.04.06 successfully.
Comment 10 Larry the Git Cow gentoo-dev 2017-12-15 12:01:00 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=819d5014a7859a590292287d76e5a708daf230c0

commit 819d5014a7859a590292287d76e5a708daf230c0
Author:     Guilherme Amadio <amadio@gentoo.org>
AuthorDate: 2017-12-14 16:05:56 +0000
Commit:     Guilherme Amadio <amadio@gentoo.org>
CommitDate: 2017-12-15 11:56:09 +0000

    sci-physics/root: version bump to 6.12.04
    
    Closes: https://bugs.gentoo.org/622034
    Closes: https://bugs.gentoo.org/617160
    Closes: https://bugs.gentoo.org/599274
    Closes: https://bugs.gentoo.org/596290
    
    Package-Manager: Portage-2.3.18, Repoman-2.3.6

 sci-physics/root/Manifest                         |   1 +
 sci-physics/root/files/root-6.11.02-hsimple.patch |  34 +++
 sci-physics/root/metadata.xml                     |  32 +-
 sci-physics/root/root-6.12.04.ebuild              | 345 ++++++++++++++++++++++
 4 files changed, 403 insertions(+), 9 deletions(-)