x86_64-pc-linux-gnu-g++ -c -O2 -pipe -march=native -Dunix -O2 -pipe -march=native -I. -I/usr/include/fltk-1 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_THREAD_SAFE -D_REENTRANT -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx treedraw.cxx: In function ‘void print_plot(FD_nj_plot*, bool, const char*)’: treedraw.cxx:3099:43: error: ‘class tree_panel’ has no member named ‘top_window’ if (!p) p = (char*)fd_nj_plot->panel->top_window()->label(); ^ Makefile:57: recipe for target 'treedraw.o' failed make: *** [treedraw.o] Error 1 # emerge -pqv '=sci-biology/seaview-4.5.4::gentoo' [ebuild U ] sci-biology/seaview-4.5.4 [4.3.5] USE="xft" # # emerge -pqv x11-libs/fltk [ebuild U ] x11-libs/fltk-1.3.3-r3 [1.3.2] USE="cairo opengl threads xft xinerama* -debug -doc -examples -games -static-libs (-pdf%)" # # emerge --info '=sci-biology/seaview-4.5.4::gentoo' Portage 2.2.26 (python 2.7.9-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.22-r4, 3.18.28-default x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.18.28-default-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9650_@_3.00GHz-with-gentoo-2.2 KiB Mem: 16409848 total, 13968128 free KiB Swap: 15647296 total, 15102712 free Timestamp of repository gentoo: Sat, 09 Jul 2016 23:00:01 +0000 sh bash 4.3_p42-r1 ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1 distcc 3.1 x86_64-pc-linux-gnu [disabled] app-shells/bash: 4.3_p42-r1::gentoo dev-java/java-config: 2.2.0-r3::gentoo dev-lang/perl: 5.20.2::gentoo dev-lang/python: 2.7.9-r1::gentoo, 3.3.5-r1::gentoo, 3.4.3::gentoo dev-util/cmake: 3.3.1-r1::gentoo dev-util/pkgconfig: 0.28-r2::gentoo sys-apps/baselayout: 2.2::gentoo sys-apps/openrc: 0.19.1::gentoo sys-apps/sandbox: 2.6-r1::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo sys-devel/automake: 1.4_p6-r1::gentoo, 1.5-r1::gentoo, 1.9.6-r3::gentoo, 1.10.3::gentoo, 1.11.6::gentoo, 1.12.6::gentoo, 1.13.4::gentoo, 1.15::gentoo sys-devel/binutils: 2.25.1-r1::gentoo sys-devel/gcc: 4.3.5::gentoo, 4.4.7::gentoo, 4.5.4::gentoo, 4.6.3::gentoo, 4.7.4::gentoo, 4.8.5::gentoo, 4.9.3::gentoo sys-devel/gcc-config: 1.7.3::gentoo sys-devel/libtool: 2.4.6::gentoo sys-devel/make: 4.1-r1::gentoo sys-kernel/linux-headers: 3.18::gentoo (virtual/os-headers) sys-libs/glibc: 2.22-r4::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 science location: /var/lib/layman/science masters: gentoo priority: 0 haskell location: /var/lib/layman/haskell masters: gentoo priority: 1 x-portage location: /usr/local/portage masters: gentoo priority: 2 x-layman location: /var/lib/layman masters: gentoo priority: 3 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/bind /var/lib/hsqldb /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.4/ext-active/ /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.4/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.4/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=native" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news nostrip parallel-fetch preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="rsync://ftp.fi.muni.cz/pub/linux/gentoo/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" USE="X accessibility alsa amd64 amr apache apache2 berkdb bzip2 cairo cgi cli cracklib crypt cups cxx dbus device-mapper dri encode ffmpeg flac fontconfig fortran gd gdbm geoip gnutls hal iconv id3tag innodb java jce jpeg jpg ladspa laptop mad maildir mmx mmxext modules mpi mpich2 multilib mysql ncurses nfs nls nptl nptlonly nsplugin ogg opengl openmp openssl pam pcre perl php png policykit postfix procmail python readline sasl seccomp server session sndfile spf sse sse2 ssl suexec svg syslog tcpd threads tiff truetype unicode usb wavpack xattr xml xorg xvfb zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3 sse4_1 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en cs cz" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Martin, I've pushed a new version to tree. I don't get any errors, could you try 4.6 as soon as it trickles down to you. commit 924e136387717515e0531c0a6657677f7edfdcb8 Author: David Seifert <soap@gentoo.org> Date: Sun Jul 31 14:10:31 2016 +0200 sci-biology/seaview: version bump * EAPI=6
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6c107298cc9dd9838f6ee259253dae994b67dc22 commit 6c107298cc9dd9838f6ee259253dae994b67dc22 Author: David Seifert <soap@gentoo.org> AuthorDate: 2020-11-01 18:36:17 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2020-11-01 18:36:17 +0000 sci-biology/seaview: Remove old 4.5.4 Closes: https://bugs.gentoo.org/588506 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> sci-biology/seaview/Manifest | 1 - sci-biology/seaview/seaview-4.5.4.ebuild | 76 -------------------------------- 2 files changed, 77 deletions(-)
