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Bug 543510 - sci-biology/biopython needs to depend on sci-biology/emboss which needs to depend on sci-biology/primer3
Summary: sci-biology/biopython needs to depend on sci-biology/emboss which needs to de...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
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Keywords:
Depends on: 544516
Blocks:
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Reported: 2015-03-16 14:25 UTC by Horea Christian
Modified: 2015-03-26 07:11 UTC (History)
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Description Horea Christian 2015-03-16 14:25:00 UTC 
Biopython allows users to call external cli tools via python bindings. One example of such a tool is 

from Bio.Emboss.Applications import Primer3Commandline

This tool uses the eprimer3 emboss command which in turn uses the primer3_core program from primer3. This should be taken into account in the dependencies of biopython and eboss.
Comment 1 Andrew Savchenko gentoo-dev 2015-03-25 22:12:18 UTC 
This bug actually contains two related requests, so I filed a separate report.
Comment 2 Justin Lecher (RETIRED) gentoo-dev 2015-03-26 07:11:37 UTC 
+  26 Mar 2015; Justin Lecher <jlec@gentoo.org> biopython-1.65.ebuild:
+  Add note for embos support, bug #543510
+