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Bug 542012 - net-misc/exabgp-3.2.17 with dev-libs/libnl-3.2.25 - file collision in /usr/lib64/python2.7/site-packages/netlink/__init__.py
Summary: net-misc/exabgp-3.2.17 with dev-libs/libnl-3.2.25 - file collision in /usr/li...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Tony Vroon (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-03-03 16:22 UTC by Toralf Förster
Modified: 2019-01-25 12:02 UTC (History)
4 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Toralf Förster gentoo-dev 2015-03-03 16:22:53 UTC
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/coroutine.py to coroutine.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/counter.py to counter.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/enumeration.py to enumeration.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/errstr.py to errstr.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/ip.py to ip.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/od.py to od.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/trace.py to trace.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/util/usage.py to usage.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/__init__.py to __init__.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/debug.py to debug.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/logger.py to logger.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp/version.py to version.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/netlink/test/get.py to get.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/netlink/test/route.py to route.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/netlink/__init__.py to __init__.pyc
byte-compiling /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/netlink/route.py to route.pyc
writing byte-compilation script '/var/tmp/portage/net-misc/exabgp-3.2.17/temp/tmp9g9yzD.py'
/usr/bin/python2.7 -OO /var/tmp/portage/net-misc/exabgp-3.2.17/temp/tmp9g9yzD.py
removing /var/tmp/portage/net-misc/exabgp-3.2.17/temp/tmp9g9yzD.py
running install_scripts
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/lib
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/lib/python-exec
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/lib/python-exec/python2.7
copying /var/tmp/portage/net-misc/exabgp-3.2.17/work/exabgp-exabgp-3.2.17-python2_7/scripts/exabgp -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib/python-exec/python2.7
changing mode of /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib/python-exec/python2.7/exabgp to 755
running install_data
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/etc
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/watchdog-1.sh -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/watchdog-1.pl -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/tcp-server -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/syslog-1.py -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/read-write.py -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/healthcheck.py -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/dynamic-1.sh -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
copying etc/exabgp/processes/dynamic-1.pl -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/etc/exabgp
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/lib/systemd
creating /var/tmp/portage/net-misc/exabgp-3.2.17/image/_python2.7/usr/lib/systemd/system
copying etc/systemd/exabgp.service -> /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib/systemd/system
running install_egg_info
Writing /var/tmp/portage/net-misc/exabgp-3.2.17/image//_python2.7/usr/lib64/python2.7/site-packages/exabgp-3.2.17-py2.7.egg-info
 * python2_7: running distutils-r1_run_phase distutils-r1_python_install_all
 * This package will overwrite one or more files that may belong to other
 * packages (see list below).
 * 
 * Detected file collision(s):
 * 
 * 	/usr/lib64/python2.7/site-packages/netlink/__init__.py
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-libs/libnl-3.2.25:3::gentoo
 * 	/usr/lib64/python2.7/site-packages/netlink/__init__.py
 * 
 * Package 'net-misc/exabgp-3.2.17' NOT merged due to file collisions. If
 * necessary, refer to your elog messages for the whole content of the
 * above message.

!!! existing preserved libs found

 * IMPORTANT: 1 news items need reading for repository 'gentoo'.
 * Use eselect news to read news items.


This is an chroot build bot image named 'amd64-hardened-unstable.1' at a hardened host acting as a tinderbox.
quick search: https://bugs.gentoo.org/buglist.cgi?quicksearch=net-misc%2Fexabgp

  
Portage 2.2.14 (python 2.7.9-final-0, hardened/linux/amd64, gcc-4.9.2, glibc-2.19-r1, 3.18.8-hardened x86_64)
=================================================================
System uname: Linux-3.18.8-hardened-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2
KiB Mem:    16164808 total,   1077056 free
KiB Swap:   16777212 total,  16748352 free
Timestamp of tree: Sun, 01 Mar 2015 00:45:01 +0000
ld GNU ld (Gentoo 2.24 p1.4) 2.24
app-shells/bash:          4.2_p53
dev-java/java-config:     2.2.0
dev-lang/perl:            5.20.2
dev-lang/python:          2.7.9-r2, 3.3.5-r1
dev-util/pkgconfig:       0.28-r1
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.11
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.69
sys-devel/automake:       1.9.6-r4, 1.10.3-r1, 1.11.6-r1, 1.12.6, 1.13.4
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.8.3, 4.9.2
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.4
sys-devel/make:           4.1-r1
sys-kernel/linux-headers: 3.16 (virtual/os-headers)
sys-libs/glibc:           2.19-r1
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -Wformat -Werror=format-security"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/games/angband/edit/ /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe -Wformat -Werror=format-security"
DISTDIR="/var/tmp/distfiles"
EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --quiet --jobs 1"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.uni-erlangen.de/pub/mirrors/gentoo rsync://mirror.netcologne.de/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gor.bytemark.co.uk/gentoo/ rsync://ftp.snt.utwente.nl/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="X acl aes-ni alsa amd64 apache2 avx avx2 berkdb bzip2 cairo cli corefonts cracklib crypt cups cxx dbus dnssec dot dri drmkms dvd ecc extraengine ffmpeg fontconfig fortran fpm gd gdbm gif gtk gudev gui hardened iconv icu isag jadetex jpeg justify lapack libav libkms libvirtd logrotate macvtap mbox minizip mmx modules multilib mysql ncurses nls nptl ogg opengl openmp openssl pam pax_kernel pcre pcre16 plasma png policykit python qemu qt3support qt5 readline session spice sqlite sse sse2 sse4 sse4_1 sse4_2 ssh-askpass ssl ssse3 svg tcpd theora thinkpad threads tk tls truetype uml unicode urandom usb usbredir uxa v4l v4l2 video vorbis xa xattr xkb xmp xscreensaver xslt xtpax xvfb xvmc zenmap zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console  presenter-minimizer" LINGUAS="en en_GB" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON
Comment 1 Toralf Förster gentoo-dev 2016-06-01 15:58:34 UTC
 * Detected file collision(s):
 * 
 * 	/usr/lib64/python2.7/site-packages/netlink/__init__.py
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * dev-libs/libnl-3.2.27:3::gentoo
 * 	/usr/lib64/python2.7/site-packages/netlink/__init__.py
 * 
 * Package 'net-misc/exabgp-3.2.17' NOT merged due to file collisions. If
 * necessary, refer to your elog messages for the whole content of the
 * above message.

 * GNU info directory index is up-to-date.
Comment 2 Zac Medico gentoo-dev 2019-01-18 02:20:52 UTC
Current upstream versions have netlink nested under the exabgp namespace:

https://github.com/Exa-Networks/exabgp/tree/4.0.10/lib/exabgp/netlink
Comment 3 Larry the Git Cow gentoo-dev 2019-01-25 09:29:47 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0e3f5038684f55212a24f5014e159ba2b80818be

commit 0e3f5038684f55212a24f5014e159ba2b80818be
Author:     Tony Vroon <chainsaw@gentoo.org>
AuthorDate: 2019-01-25 09:29:34 +0000
Commit:     Tony Vroon <chainsaw@gentoo.org>
CommitDate: 2019-01-25 09:29:34 +0000

    net-misc/exabgp: 3.4.26 version bump
    
    As reported by Toralf Förster, early versions of this package
    incorrectly installed netlink into the global namespace.
    Thanks to Zac Medico for reviving the bug report and confirming
    that the issue was fixed upstream.
    
    Closes: https://bugs.gentoo.org/542012
    Signed-Off-By: Tony Vroon <chainsaw@gentoo.org>
    Package-Manager: Portage-2.3.51, Repoman-2.3.11

 net-misc/exabgp/Manifest             |  1 +
 net-misc/exabgp/exabgp-3.4.26.ebuild | 16 ++++++++++++++++
 2 files changed, 17 insertions(+)
Comment 4 Mikle Kolyada (RETIRED) archtester Gentoo Infrastructure gentoo-dev Security 2019-01-25 09:52:37 UTC
Not fixed, commit is broken due-to tarball misnaming
Comment 5 Larry the Git Cow gentoo-dev 2019-01-25 12:02:57 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=37e822bd95701e0fca10c2cd7c3e8c68d4fbfd39

commit 37e822bd95701e0fca10c2cd7c3e8c68d4fbfd39
Author:     Tony Vroon <chainsaw@gentoo.org>
AuthorDate: 2019-01-25 12:02:42 +0000
Commit:     Tony Vroon <chainsaw@gentoo.org>
CommitDate: 2019-01-25 12:02:42 +0000

    net-misc/exabgp: Work around awkward upstream tarball filename
    
    As per Mikle "zlogene" Kolyada, we cannot allow the upstream
    tarball name to persist in the tree as it would cause distfile
    collisions.
    Bumping revision, belt & braces.
    
    Closes: https://bugs.gentoo.org/542012
    Signed-Off-By: Tony Vroon <chainsaw@gentoo.org>
    Package-Manager: Portage-2.3.51, Repoman-2.3.11

 net-misc/exabgp/Manifest                                          | 2 +-
 net-misc/exabgp/{exabgp-3.4.26.ebuild => exabgp-3.4.26-r1.ebuild} | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)