* Detected file collision(s): * * /usr/bin/mix * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * * sci-biology/phylip-3.69-r1:0::gentoo * /usr/bin/mix * * Package 'dev-lang/elixir-1.0.2' NOT merged due to file collisions. If * necessary, refer to your elog messages for the whole content of the * above message. * GNU info directory index is up-to-date. !!! existing preserved libs: >>> package: dev-libs/xapian-1.3.1-r1 * - /usr/lib64/libxapian.so.22 * - /usr/lib64/libxapian.so.22.6.6 * used by /usr/lib64/perl5/vendor_perl/5.20.1/x86_64-linux/auto/Search/Xapian/Xapian.so (dev-perl/Search-Xapian-1.2.19.0) >>> package: net-libs/gnutls-2.12.23-r6 * - /usr/lib64/libgnutls.so.28 * - /usr/lib64/libgnutls.so.28.41.4 * used by /usr/bin/ncdc (net-p2p/ncdc-1.19.1) * used by /usr/bin/wmbiff (x11-plugins/wmbiff-0.4.28) * used by /usr/lib64/gnutls-0.1.5/ghc-7.8.4/libHSgnutls-0.1.5-ghc7.8.4.so (dev-haskell/gnutls-0.1.5) * used by 4 other files >>> package: dev-libs/boost-1.55.0-r2 * - /usr/lib64/libboost_regex.so.1.56.0 * used by /usr/bin/licq (net-im/licq-1.8.2) * - /usr/lib64/libboost_program_options.so.1.56.0 * used by /usr/bin/leechcraft (app-leechcraft/lc-core-0.6.70) Use emerge @preserved-rebuild to rebuild packages using these libraries * IMPORTANT: config file '/etc/crontab' needs updating. * See the CONFIGURATION FILES section of the emerge * man page to learn how to update config files. ! ! ! This is a build bot chroot located at a hardened amd64 host ! ! ! Portage 2.2.15 (python 2.7.9-final-0, default/linux/amd64/13.0, gcc-4.9.2, glibc-2.20-r1, 3.18.2-hardened-r1 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-3.18.2-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16166860 total, 1799024 free KiB Swap: 16777212 total, 16711512 free Timestamp of tree: Sat, 24 Jan 2015 00:15:01 +0000 sh bash 4.3_p33-r1 ld GNU ld (Gentoo 2.24 p1.4) 2.24 ccache version 3.2.1 [disabled] app-shells/bash: 4.3_p33-r1 dev-lang/perl: 5.20.1-r4 dev-lang/python: 2.7.9-r1, 3.3.5-r1, 3.4.2 dev-util/ccache: 3.2.1-r1 dev-util/cmake: 3.1.0 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.13.8 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.69 sys-devel/automake: 1.11.6-r1, 1.13.4, 1.15 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.9.2 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.5 sys-devel/make: 4.1-r1 sys-kernel/linux-headers: 3.18 (virtual/os-headers) sys-libs/glibc: 2.20-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --deep --jobs 1" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.de.gentoo.org/gentoo-portage" USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mbox mmx modules multilib ncurses nls nptl openmp pam pax_kernel pcre readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON The build log is stored in /var/log/portage/_emerge_20150124-025627.log The chroot image is amd64-unstable
*** Bug 572444 has been marked as a duplicate of this bug. ***
Julian, do you prefer that we rename mix in phylip?
*** Bug 567460 has been marked as a duplicate of this bug. ***
(In reply to David Seifert from comment #2) > Julian, do you prefer that we rename mix in phylip? [some other guy] Yeah, mix seems to be high profile user facing http://elixir-lang.org/getting-started/mix-otp/introduction-to-mix.html build tool.
*** Bug 547730 has been marked as a duplicate of this bug. ***
Ping?
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0c014a7762f9b51e602420690a6388d33aefce01 commit 0c014a7762f9b51e602420690a6388d33aefce01 Author: Sergei Trofimovich <slyfox@gentoo.org> AuthorDate: 2018-02-15 23:22:45 +0000 Commit: Sergei Trofimovich <slyfox@gentoo.org> CommitDate: 2018-02-15 23:23:15 +0000 sci-biology/phylip: block against dev-lang/elixir, bug #537514 Reported-by: Toralf Förster Bug: https://bugs.gentoo.org/537514 Package-Manager: Portage-2.3.24, Repoman-2.3.6 sci-biology/phylip/phylip-3.696-r2.ebuild | 55 +++++++++++++++++++++++++++++++ 1 file changed, 55 insertions(+) https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=88aad581ffe6b94fa446a1768f71f85dab516171 commit 88aad581ffe6b94fa446a1768f71f85dab516171 Author: Sergei Trofimovich <slyfox@gentoo.org> AuthorDate: 2018-02-15 23:20:30 +0000 Commit: Sergei Trofimovich <slyfox@gentoo.org> CommitDate: 2018-02-15 23:23:14 +0000 dev-lang/elixir: block against sci-biology/phylip, bug #537514 Reported-by: Toralf Förster Bug: https://bugs.gentoo.org/537514 Package-Manager: Portage-2.3.24, Repoman-2.3.6 dev-lang/elixir/elixir-1.6.1-r1.ebuild | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+)}
*** Bug 668540 has been marked as a duplicate of this bug. ***
