Created attachment 393170 [details] emerge log x86_64-pc-linux-gnu-gfortran -o ambfor ambfor.o alloc.o angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o tors.o vdwlj.o math.o optimise.o switch.o wrtout.o pbc.o -lm x86_64-pc-linux-gnu-gfortran -O2 -pipe -c -o md.o md.f x86_64-pc-linux-gnu-gfortran -O2 -pipe -c -o verlet.o verlet.f x86_64-pc-linux-gnu-gcc -O2 -pipe -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -DMD -c alloc.c -o allocmd.o x86_64-pc-linux-gnu-gfortran -o ambmd md.o verlet.o allocmd.o angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o tors.o vdwlj.o math.o optimise.o switch.o wrtout.o pbc.o -lm make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/molden-4.8-r2/work/molden4.8/ambfor' make -C surf depend make[1]: Entering directory '/var/tmp/portage/sci-chemistry/molden-4.8-r2/work/molden4.8/surf' making dependencies... Makefile:47: recipe for target 'depend' failed make[1]: *** [depend] Error 1 make[1]: Leaving directory '/var/tmp/portage/sci-chemistry/molden-4.8-r2/work/molden4.8/surf' makefile:239: recipe for target 'surf/surf' failed make: *** [surf/surf] Error 2 * ERROR: sci-chemistry/molden-4.8-r2::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/molden-4.8-r2::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/molden-4.8-r2::gentoo'`. * The complete build log is located at '/var/log/portage/sci-chemistry:molden-4.8-r2:20150104-195906.log'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/molden-4.8-r2/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molden-4.8-r2/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/molden-4.8-r2/work/molden4.8' * S: '/var/tmp/portage/sci-chemistry/molden-4.8-r2/work/molden4.8' This chroot image is located at a hardened amd64 host. Portage 2.2.14 (python 2.7.9-final-0, default/linux/amd64/13.0, gcc-4.8.3, glibc-2.19-r1, 3.17.7-hardened-r1 x86_64) ================================================================= System uname: Linux-3.17.7-hardened-r1-x86_64-Intel-R-_Core-TM-_i7-3770_CPU_@_3.40GHz-with-gentoo-2.2 KiB Mem: 16166924 total, 445140 free KiB Swap: 16777212 total, 16766308 free Timestamp of tree: Sun, 04 Jan 2015 17:45:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 ccache version 3.1.9 [disabled] app-shells/bash: 4.2_p53 dev-lang/perl: 5.18.2-r2 dev-lang/python: 2.7.9-r1, 3.3.5-r1 dev-util/ccache: 3.1.9-r4 dev-util/cmake: 2.8.12.2-r1 dev-util/pkgconfig: 0.28-r1 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.12.4 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.13, 2.69 sys-devel/automake: 1.11.6-r1, 1.13.4 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.7.3 sys-devel/libtool: 2.4.2-r1 sys-devel/make: 4.0-r1 sys-kernel/linux-headers: 3.16 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.5/ext-active/ /etc/php/cgi-php5.5/ext-active/ /etc/php/cli-php5.5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--nospinner --tree --quiet-build --deep --jobs 1" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.de.gentoo.org/gentoo-portage" USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mbox mmx modules multilib ncurses nls nptl openmp pam pax_kernel pcre readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Could you please retry with MAKEOPTS=-j1 ?
(In reply to Justin Lecher from comment #1) > Could you please retry with MAKEOPTS=-j1 ? rtm : MAKEOPTS="-j1"
Does this still happen with version 5 or 5.5?
(In reply to Justin Lecher from comment #3) don't hink so : emerge at: amd64-gnome-unstable_20160121-220651 Thu Feb 4 17:44:28 2016 >>> sci-chemistry/molden-5.0
/me wonders if this : * Please install currently selected gcc version with USE=fortran. * If you intend to use a different compiler then gfortran, please * set FC variable accordingly and take care that the necessary * fortran dialects are supported. * ERROR: sci-chemistry/molden-5.5::gentoo failed (setup phase): * Currently no working fortran compiler is available at few images could be avoided by a DEPEND definition ?
(In reply to Toralf Förster from comment #5) > /me wonders if this : > > > * Please install currently selected gcc version with USE=fortran. > * If you intend to use a different compiler then gfortran, please > * set FC variable accordingly and take care that the necessary > * fortran dialects are supported. > > * ERROR: sci-chemistry/molden-5.5::gentoo failed (setup phase): > * Currently no working fortran compiler is available > > > > at few images could be avoided by a DEPEND definition ? No it can't and you are changing the defaults. gcc[fortran] is the default. And as you can have multiple gcc installed we have no way to express it in the ebuild correctly. So we need to test.
(In reply to Toralf Förster from comment #4) > (In reply to Justin Lecher from comment #3) > don't hink so : > > emerge at: amd64-gnome-unstable_20160121-220651 > Thu Feb 4 17:44:28 2016 >>> sci-chemistry/molden-5.0 Could you please attach an up2date build.log?
I cannot reproduce this here on a plain stage3 chroot.
(In reply to Justin Lecher from comment #7) sry - there it emerged fine: amd64-gnome-unstable_20160121-220651 Thu Feb 4 17:44:28 2016 >>> sci-chemistry/molden-5.0 Thu Feb 11 20:32:23 2016 <<< sci-chemistry/molden-5.0 Thu Feb 11 20:32:32 2016 >>> sci-chemistry/molden-5.5 molden: Thu Feb 4 17:42:39 2016: 1 minute, 49 seconds molden: Thu Feb 11 20:30:10 2016: 2 minutes, 22 seconds molden: 2 times Do you want to have the build.log of a successful build ?
Created attachment 429378 [details] emerge-info.txt makefile:291: recipe for target 'surf/surf' failed make: *** [surf/surf] Error 2 * ERROR: sci-chemistry/molden-5.5::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-chemistry/molden-5.5::gentoo'`,
Created attachment 429380 [details] emerge-history.txt
Created attachment 429382 [details] environment
Created attachment 429384 [details] sci-chemistry:molden-5.5:20160331-170334.log
Created attachment 450476 [details] emerge-info.txt failes here even with USE=fortran
Created attachment 450478 [details] emerge-history.txt
Created attachment 450480 [details] environment
Created attachment 450482 [details] sci-chemistry:molden-5.5:20161016-192154.log
5.5 builds fine for me with current systems
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ec853626b72f671a8a201bb5472680a9801b3f89 commit ec853626b72f671a8a201bb5472680a9801b3f89 Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org> AuthorDate: 2022-02-19 13:58:05 +0000 Commit: Andrew Ammerlaan <andrewammerlaan@gentoo.org> CommitDate: 2022-02-19 13:59:03 +0000 sci-chemistry/molden: add version 6.9 Bug: https://bugs.gentoo.org/831519 Bug: https://bugs.gentoo.org/822510 Bug: https://bugs.gentoo.org/775626 Bug: https://bugs.gentoo.org/610968 Bug: https://bugs.gentoo.org/534712 Closes: https://bugs.gentoo.org/721290 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> sci-chemistry/molden/Manifest | 1 + .../molden/files/molden-6.9-ldflags.patch | 87 ++++++++++++++++++++++ sci-chemistry/molden/molden-6.9.ebuild | 81 ++++++++++++++++++++ 3 files changed, 169 insertions(+)
