Bug 483354 – dev-python/root_numpy-2.1.0 fails tests

• Status: RESOLVED OBSOLETE
• Product: Gentoo Linux

[Description Patrick Lauer 2013-09-02 08:28:04 UTC]

>>> Source compiled.
 * python2_7: running distutils-r1_run_phase python_test
Failure: ImportError (No module named ROOT) ... ERROR

======================================================================
ERROR: Failure: ImportError (No module named ROOT)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib64/python2.7/site-packages/nose/loader.py", line 413, in loadTestsFromName
    addr.filename, addr.module)
  File "/usr/lib64/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/lib64/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/var/tmp/portage/dev-python/root_numpy-2.1.0/work/root_numpy-2.1.0-python2_7/lib/root_numpy/tests/test.py", line 5, in <module>
    from ROOT import TChain, TFile, TTree, TH1D, TH2D, TH3D
ImportError: No module named ROOT

----------------------------------------------------------------------
Ran 1 test in 0.128s

FAILED (errors=1)
 * ERROR: dev-python/root_numpy-2.1.0::gentoo failed (test phase):
 *   Testing failed with python2.7

Portage 2.2.0 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.1, glibc-2.17, 3.10.6-gentoo x86_64)
=================================================================
System uname: Linux-3.10.6-gentoo-x86_64-AMD_Phenom-tm-_II_X4_965_Processor-with-gentoo-2.2
KiB Mem:     7920972 total,   3061304 free
KiB Swap:   25165812 total,  25157624 free
Timestamp of tree: Unknown
ld GNU ld (GNU Binutils) 2.23.2
app-shells/bash:          4.2_p45
dev-lang/python:          2.7.5-r1, 3.3.2-r1
dev-util/cmake:           2.8.11.1
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.13.4, 1.14
sys-devel/binutils:       2.23.2
sys-devel/gcc:            4.8.1
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           3.82-r4
sys-kernel/linux-headers: 3.9 (virtual/os-headers)
sys-libs/glibc:           2.17
Repositories: gentoo
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms split-elog strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus declarative dri dts dvd dvdr egl emboss encode exif fam firefox flac fortran gdbm gif gpm gtk iconv ipv6 jpeg kde kipi lcms ldap libnotify mad mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl ogg opengl openmp openvg pam pango pcre pdf phonon plasma png policykit ppds qt3support qt4 readline sdl semantic-desktop session spell sqlite sse sse2 ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xa xcb xcomposite xinerama xml xscreensaver xv xvfb xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19" USERLAND="GNU" VIDEO_CARDS="vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

[Comment 1 Michał Górny 2013-09-14 11:58:31 UTC]

Created attachment 358638 [details, diff]
patch to ebuild

Please let me know if this patch is ok to commit.

Changes:

1. enforced a single impl since sci-physics/root supports that only,

2. required USE=python on sci-physics/root,

3. fixed the nosetests invocation,

4. fixed EXAMPLES not to be compressed.

[Comment 2 Michał Górny 2013-09-14 11:59:00 UTC]

Comment on attachment 358638 [details, diff]
patch to ebuild

Sorry, wrong bug :).

[Comment 3 Benda Xu 2018-03-12 07:51:21 UTC]

The test still fails with root_numpy-4.7.3, but with a message of
> root_numpy.tmva.tests.test_tmva_methodcuts ... open('/dev/random'): Permission denied  
instead.

[Comment 4 Guilherme Amadio 2018-03-13 09:52:44 UTC]

(In reply to Benda Xu from comment #3)
> The test still fails with root_numpy-4.7.3, but with a message of
> > root_numpy.tmva.tests.test_tmva_methodcuts ... open('/dev/random'): Permission denied  
> instead.

Looks like a sandbox violation caused by ROOT trying to access /dev/random. I don't think this is a problem with root_numpy.

[Comment 5 Benda Xu 2018-03-16 02:49:33 UTC]

(In reply to Guilherme Amadio from comment #4)
> (In reply to Benda Xu from comment #3)
> > The test still fails with root_numpy-4.7.3, but with a message of
> > > root_numpy.tmva.tests.test_tmva_methodcuts ... open('/dev/random'): Permission denied  
> > instead.
> 
> Looks like a sandbox violation caused by ROOT trying to access /dev/random.
> I don't think this is a problem with root_numpy.

root_numpy will need to add a sandbox_predict for that.  So it is still a bug for root_numpy.

[Comment 6 Michał Górny 2020-10-09 08:05:51 UTC]

Package removed.