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Bug 395891 - [science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy-memenew-4.0.0-r1.tar.gz
Summary: [science overlay] sci-biology/embassy-memenew-4.0.0-r1 fails to fetch embassy...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2011-12-24 13:43 UTC by Juergen Rose
Modified: 2015-03-28 17:47 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
After deleting the manifest I was able to emerge embassy-memenew with this ebuild. (embassy-memenew-4.0.0-r1.ebuild,447 bytes, text/plain)
2011-12-26 11:26 UTC, Juergen Rose 		Details
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Description Juergen Rose 2011-12-24 13:43:12 UTC 
'emerge world' fails with:
root@impala:/usr/local/portage/sci-biology(326)# emerge -uvND world

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     U  ] sci-biology/embassy-memenew-4.0.0-r1 [4.0.0] USE="X mysql%* pdf%* png postgres%* -static-libs%" 0 kB [0=>1]
...
>>> Emerging (1 of 11) sci-biology/embassy-memenew-4.0.0-r1 from science
 * Fetching files in the background. To view fetch progress, run
 * `tail -f /var/log/emerge-fetch.log` in another terminal.
!!! Fetched file: embassy-memenew-4.0.0-r1.tar.gz VERIFY FAILED!
!!! Reason: Insufficient data for checksum verification
!!! Got:      
!!! Expected: MD5 RMD160 SHA1 SHA256 SHA512 WHIRLPOOL
 * Fetch failed for 'sci-biology/embassy-memenew-4.0.0-r1', Log file:


There is not any /usr/portage/distfiles/embassy-memenew-4.0.0-r1.tar.gz file:
root@impala:/usr/local/portage/sci-biology(327)# ll /usr/portage/distfiles/embassy-memenew-*
/bin/ls: cannot access /usr/portage/distfiles/embassy-memenew-*: No such file or directory
Comment 1 Juergen Rose 2011-12-26 11:25:03 UTC 
After adding the SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/old/6.3.1/MEMENEW-4.0.0.tar.gz" to embassy-memenew-4.0.0-r1.ebuild 'emerge embassy-memenew' fails with:

>>> Downloading 'ftp://emboss.open-bio.org/pub/EMBOSS/old/6.3.1/MEMENEW-4.0.0.tar.gz'
--2011-12-26 12:20:23--  ftp://emboss.open-bio.org/pub/EMBOSS/old/6.3.1/MEMENEW-4.0.0.tar.gz
           => `/usr/portage_impala/distfiles/MEMENEW-4.0.0.tar.gz'
Resolving emboss.open-bio.org (emboss.open-bio.org)... 208.94.50.58
Connecting to emboss.open-bio.org (emboss.open-bio.org)|208.94.50.58|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD (1) /pub/EMBOSS/old/6.3.1 ... done.
==> SIZE MEMENEW-4.0.0.tar.gz ... 513418
==> PASV ... done.    ==> RETR MEMENEW-4.0.0.tar.gz ... done.
Length: 513418 (501K) (unauthoritative)

100%[======================================>] 513,418      162K/s   in 3.1s    

2011-12-26 12:20:29 (162 KB/s) - `/usr/portage_impala/distfiles/MEMENEW-4.0.0.tar.gz' saved [513418]

!!! Fetched file: MEMENEW-4.0.0.tar.gz VERIFY FAILED!
!!! Reason: Filesize does not match recorded size
!!! Got:      513418
!!! Expected: 93600
Comment 2 Juergen Rose 2011-12-26 11:26:34 UTC 
Created attachment 296969 [details]
After deleting the manifest I was able to emerge embassy-memenew with this ebuild.
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2012-02-20 14:34:30 UTC 
# Justin Lecher <jlec@gentoo.org> (20 Feb 2012)
# They are broken in one or the other way
# Need to be bumped to emboss-6.4.0
sci-biology/emboss::science
sci-biology/embassy::science
sci-biology/embassy-cbstools::science
sci-biology/embassy-domainatrix::science
sci-biology/embassy-domalign::science
sci-biology/embassy-domsearch::science
sci-biology/embassy-emnu::science
sci-biology/embassy-esim4::science
sci-biology/embassy-hmmer::science
sci-biology/embassy-iprscan::science
sci-biology/embassy-mse::science
sci-biology/embassy-phylipnew::science
sci-biology/embassy-signature::science
sci-biology/embassy-structure::science
sci-biology/embassy-topo::science
sci-biology/embassy-vienna::science