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Bug 349170 - sci-chemistry/openbabel-2.2.3 fails to build with gcc-4.6
Summary: sci-chemistry/openbabel-2.2.3 fails to build with gcc-4.6
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo Chemistry-Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: gcc-4.6
  Show dependency tree
 
Reported: 2010-12-20 09:26 UTC by Kacper Kowalik (Xarthisius) (RETIRED)
Modified: 2011-03-26 11:05 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
build log (openbabel-2.2.3-build.log,31.30 KB, text/plain)
2010-12-20 09:26 UTC, Kacper Kowalik (Xarthisius) (RETIRED)
Details

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Description Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-12-20 09:26:07 UTC
Portage 2.1.9.25 (default/linux/x86/10.0/desktop, gcc-4.6.0-alpha20101211-asneeded, glibc-2.12.1-r3, 2.6.36-gentoo-r4 x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.36-gentoo-r4-x86_64-Intel-R-_Core-TM-_i7_CPU_920_@_2.67GHz-with-gentoo-2.0.1
Timestamp of tree: Sat, 18 Dec 2010 02:00:02 +0000
ccache version 3.1.3 [disabled]
app-shells/bash:     4.1_p9
dev-lang/python:     2.7.1, 3.1.3
dev-util/ccache:     3.1.3
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1-r1
sys-apps/openrc:     0.6.8
sys-apps/sandbox:    2.4
sys-devel/autoconf:  2.68
sys-devel/automake:  1.9.6-r3, 1.11.1
sys-devel/binutils:  2.21
sys-devel/gcc:       4.3.5, 4.4.5, 4.5.1-r1, 4.6.0_alpha20101211::toolchain
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.4-r1
sys-devel/make:      3.82
virtual/os-headers:  2.6.36.1 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="x86 ~x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -Wimplicit-function-declaration"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=native"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages multilib-strict news nostrip parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="pl_PL.UTF-8"
LDFLAGS="-Wl,--hash-style=gnu,-O1 -Wl,--as-needed"
LINGUAS="en pl"
MAKEOPTS="-j10"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/toolchain /usr/portage/local/myoverlay"
SYNC="rsync://192.168.16.1/gentoo-portage"
USE="X a52 aac acl acpi alsa berkdb bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif gpm gtk hal iconv ipv6 jpeg lcms ldap libnotify mad mikmod mmx mng modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly ntp ogg opengl openmp pam pango pcre pdf perl png ppds pppd python qt3support qt4 readline romio sdl session slang spell sse sse2 ssl startup-notification svg sysfs tcpd tiff truetype unicode usb vorbis x264 x86 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en pl" PHP_TARGETS="php5-2" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="vesa vga" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-12-20 09:26:26 UTC
Created attachment 257606 [details]
build log
Comment 2 Ryan Hill (RETIRED) gentoo-dev 2011-02-07 23:30:58 UTC
-ENOPATCH
Comment 3 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2011-03-26 11:05:46 UTC
compiles fine with more recent gcc

Portage 2.2.0_alpha27 (default/linux/amd64/10.0, gcc-4.6.0-alpha20110226-asneeded, glibc-2.13-r1, 2.6.37-gentoo x86_64)