Portage 2.1.6.13 (!../var/cache/portage/tree/profiles/default/linux/x86/2008.0, gcc-4.4.0-asneeded, glibc-2.10.1-r0, 2.6.30-gentoo-r1 i686) ================================================================= System uname: Linux-2.6.30-gentoo-r1-i686-Quad-Core_AMD_Opteron-tm-_Processor_2350-with-gentoo-2.0.1 Timestamp of tree: Thu, 09 Jul 2009 11:30:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 4.0_p24 dev-java/java-config: 1.3.7-r1, 2.1.8-r1 dev-lang/python: 2.6.2-r1 dev-python/pycrypto: 2.0.1-r8 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.6.4 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.4.3-r3 sys-apps/sandbox: 2.0 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2, 1.11 sys-devel/binutils: 2.19.1-r1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.30 ACCEPT_KEYWORDS="x86 ~x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/glftpd/etc /opt/glftpd/ftp-data /opt/openfire/resources/security/ /opt/openjms/config /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/bufrtables /usr/share/config /var/bind /var/lib/hsqldb /var/phxd /var/spool/torque /var/vpopmail/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -pipe" DISTDIR="/var/cache/distfiles" FEATURES="ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict test test-fail-continue unmerge-orphans userfetch" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ http://ftp.uni-erlangen.de/pub/mirrors/gentoo" INSTALL_MASK=" /usr/share/doc /usr/share/man /usr/share/info" LDFLAGS="-Wl,-O1" MAKEOPTS="-j14" PKGDIR="/var/spool/portage/packages" PORTAGE_COMPRESS="" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/var/cache/portage/tree-tinderbox" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="acl berkdb bzip2 cli cracklib crypt cups dri fortran gdbm gpm iconv ipv6 isdnlog java5 java6 midi mudflap ncurses nls nostatic nptl nptlonly openmp pam pcre perl pppd python qt3support readline reflection ruby session spl ssl sysfs tcpd unicode x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Created attachment 197405 [details] Build log
It seems that avogadro build system doesn't like out-of-source compilation. The fact is that config.h is generated and placed into the _build dir, so we have two alternative ways of fixing this bug. 1) fix the build system. 2) set CMAKE_IN_SOURCE_BUILD="1" into the ebuild.
Why do you think Avogadro does not like out of source builds? That is how I do all my development. I am looking into the issue, but cannot reproduce it here. That file is included in quite a few other places too. Of course the config.h will be placed in the build directory, but it is also added as an include directory. I will look into the issue now, and see if I can spot anything.
I am not able to reproduce, but this call should have used the application binary location, rather than the installation prefix. Fixing that means that the config.h file is not required by the plugin. Out of curiosity - are you both using GCC 4.4? I am still using GCC 4.3 here. I have committed an updated ebuild (no rev bump as it is a fix for a build failure), please try avogadro-0.9.7, v 1.3. This is also committed upstream and will be in the 0.9.8/1.0.0 release of Avogadro. Thanks. Please test, as I could not reproduce the bug here.
