>>> Unpacking source... >>> Unpacking avogadro-0.9.6.tar.bz2 to /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work >>> Source unpacked in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work >>> Preparing source in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build" loading initial cache file /var/tmp/portage/sci-chemistry/avogadro-0.9.6/temp/gentoo_common_config.cmake -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-gcc -- Check for working C compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/lib/ccache/bin/i686-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- The build type is Gentoo -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found. -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found. -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found. -- Found Qt-Version 4.5.2 -- Found OpenSSL: /usr/lib/libssl.so -- Looking for _POSIX_TIMERS -- Looking for _POSIX_TIMERS - found -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so -- Looking for XOpenDisplay in /usr/lib/libX11.so;/usr/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/libX11.so -- Found lupdate: /usr/bin/lupdate -- Found lrelease: /usr/bin/lrelease -- Found Eigen2: /usr/include/eigen2 -- checking for module 'openbabel-2.0>=2.2.0' -- found openbabel-2.0, version 2.2.1 -- Found OpenBabel 2.2 or later: openbabel -- Found OpenBabel2 executable: /usr/bin/babel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.37.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/libpython2.6.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- Found sip.h header... -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- Setting new boost python libraries -- Enabled python terminal -- Python site-packages directory: /usr/lib/python2.6/site-packages -- docbook tools not found, doc targets disabled -- <<< Gentoo configuration >>> Build type: Gentoo Install path: /usr -- Configuring done -- Generating done -- Build files have been written to: /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build" make -j14 [ 0%] [ 0%] [ 0%] [ 0%] [ 1%] [ 1%] [ 1%] Generating qrc_pythontool.cxx Generating glgraphicsview.moc Generating cube.moc Generating pluginmanager.moc [ 1%] [ 1%] Generating pythontool_p.moc Generating toolgroup.moc Generating engine.moc [ 1%] [ 2%] [ 2%] [ 2%] Generating color.moc [ 2%] Generating tool.moc Generating molecule.moc Generating periodictablescene_p.moc [ 2%] Generating plugin.moc Generating bond.moc Generating periodictableview.moc Generating zmatrix.moc [ 2%] [ 3%] [ 3%] [ 3%] [ 3%] Generating fragment.moc Generating pythonextension_p.moc Generating extension.moc [ 3%] [ 3%] Generating mesh.moc Generating pythonengine_p.moc [ 4%] Generating plotwidget.moc Generating primitive.moc Generating openbabelwrapper.moc [ 4%] Generating pythonerror.moc [ 4%] Generating atom.moc [ 4%] Generating glwidget.moc /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/openbabelwrapper.h:0: Warning: No relevant classes found. No output generated. [ 4%] [ 4%] [ 5%] [ 5%] [ 5%] Generating residue.moc Generating animation.moc Generating protein.moc Generating moleculefile.moc Generating elementdetail_p.moc [ 5%] [ 5%] [ 5%] Generating elementtranslator.moc [ 5%] [ 6%] Generating colorbutton.moc Generating bsdyengine.moc Generating elementcolor.moc Generating ui_bsdysettingswidget.h [ 6%] [ 6%] [ 6%] [ 6%] Generating libavogadro_fr.qm Generating libavogadro_en_GB.qm [ 7%] Generating libavogadro_ja.qm [ 7%] [ 7%] Generating libavogadro_zh_CN.qm [ 7%] Generating libavogadro_es.qm [ 7%] Generating libavogadro_tr.qm [ 7%] Generating libavogadro_cs.qm Generating libavogadro_ca.qm Generating libavogadro_nb.qm Generating libavogadro_pl.qm [ 8%] Generating libavogadro_pt.qm [ 8%] [ 8%] Generating libavogadro_de.qm Generating libavogadro_en_CA.qm [ 8%] [ 8%] [ 8%] [ 8%] [ 9%] Generating libavogadro_pt_BR.qm Generating libavogadro_id.qm Generating libavogadro_zh_TW.qm Generating libavogadro_fi.qm Generating libavogadro_ru.qm [ 9%] [ 9%] [ 9%] Generating libavogadro_bg.qm [ 9%] [ 10%] Generating libavogadro_nl.qm Generating libavogadro_ar.qm [ 10%] Generating libavogadro_sv.qm [ 10%] [ 10%] Generating libavogadro_sk.qm Generating libavogadro_ko.qm Generating libavogadro_it.qm Generating libavogadro_uk.qm Scanning dependencies of target avogadro [ 10%] [ 10%] [ 10%] [ 10%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o [ 10%] [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glgraphicsview.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o [ 11%] [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o [ 11%] [ 11%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o [ 12%] [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o [ 12%] [ 12%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o [ 12%] [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o [ 13%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o [ 13%] [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o [ 14%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o [ 15%] [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/openbabelwrapper.cpp.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:160:1: warning: this is the location of the previous definition [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:160:1: warning: this is the location of the previous definition [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o [ 16%] [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:160:1: warning: this is the location of the previous definition [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/filetreeitem.cpp.o [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o [ 17%] [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:31: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythontool_p.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:31: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:160:1: warning: this is the location of the previous definition [ 17%] [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:32, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:32, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:160:1: warning: this is the location of the previous definition [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:160:1: warning: this is the location of the previous definition [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engines/bsdyengine.cpp.o [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colors/elementcolor.cpp.o [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:26: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/pythonerror.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:26: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/pythonerror.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:160:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonthread_p.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:37: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:31: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/pythonthread_p.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:37: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/glwidget.cpp:31: /usr/include/features.h:160:1: warning: this is the location of the previous definition Linking CXX shared library ../../lib/libavogadro.so [ 19%] Built target avogadro [ 19%] [ 19%] [ 20%] [ 20%] [ 20%] [ 20%] [ 20%] Generating moc_axesengine.cxx Generating ui_cartoonsettingswidget.h Generating ui_dipolesettingswidget.h Generating ui_hbondsettingswidget.h Generating ui_orbitalsettingswidget.h Generating moc_forceengine.cxx Generating ui_labelsettingswidget.h [ 21%] [ 21%] [ 21%] [ 22%] Generating moc_cartoonengine.cxx [ 22%] Generating moc_hbondengine.cxx Generating moc_orbitalengine.cxx Generating moc_dipoleengine.cxx [ 22%] Generating moc_labelengine.cxx [ 22%] Generating moc_cartoonmeshgenerator.cxx [ 22%] Generating ui_overlaysettingswidget.h [ 22%] [ 22%] /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/engines/cartoonmeshgenerator.h:0: Warning: No relevant classes found. No output generated. Generating moc_simplewireengine.cxx [ 22%] [ 22%] Generating ui_ringsettingswidget.h [ 23%] [ 23%] Generating ui_ribbonsettingswidget.h Generating moc_ringengine.cxx Scanning dependencies of target axesengine Generating ui_spheresettingswidget.h Scanning dependencies of target forceengine Generating moc_overlayengine.cxx Scanning dependencies of target cartoonengine Generating moc_polygonengine.cxx Scanning dependencies of target simplewireengine Scanning dependencies of target hbondengine [ 24%] Scanning dependencies of target labelengine [ 24%] Generating ui_sticksettingswidget.h [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o [ 24%] Generating moc_sphereengine.cxx [ 24%] Generating moc_ribbonengine.cxx [ 24%] Generating moc_stickengine.cxx Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o Scanning dependencies of target polygonengine Scanning dependencies of target ringengine Scanning dependencies of target dipoleengine [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o Scanning dependencies of target overlayengine [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o Scanning dependencies of target orbitalengine [ 24%] Scanning dependencies of target ribbonengine Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o Scanning dependencies of target sphereengine [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o Scanning dependencies of target stickengine [ 24%] [ 24%] [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o [ 24%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/overlayengine.cpp.o [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/orbitalengine.dir/orbitalengine.cpp.o [ 26%] [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o Linking CXX shared module ../../../lib/simplewireengine.so Linking CXX shared module ../../../lib/forceengine.so [ 27%] [ 28%] Linking CXX shared module ../../../lib/axesengine.so [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o Building CXX object libavogadro/src/engines/CMakeFiles/overlayengine.dir/moc_overlayengine.cxx.o [ 28%] Built target simplewireengine [ 29%] Linking CXX shared module ../../../lib/polygonengine.so Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o [ 29%] [ 29%] [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o Generating ui_surfacesettingswidget.h Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/orbitalengine.dir/moc_orbitalengine.cxx.o [ 29%] [ 29%] [ 29%] Generating moc_surfaceengine.cxx Built target axesengine Built target forceengine [ 29%] [ 29%] [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o [ 29%] Scanning dependencies of target surfaceengine Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o [ 29%] [ 29%] Built target polygonengine Generating ui_wiresettingswidget.h [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o [ 29%] [ 29%] Generating qrc_aligntool.cxx Generating moc_wireengine.cxx [ 30%] Generating moc_aligntool.cxx Scanning dependencies of target aligntool Scanning dependencies of target wireengine Linking CXX shared module ../../../lib/dipoleengine.so [ 30%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o Linking CXX shared module ../../../lib/overlayengine.so [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o Linking CXX shared module ../../../lib/sphereengine.so Linking CXX shared module ../../../lib/stickengine.so Linking CXX shared module ../../../lib/ribbonengine.so [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o [ 31%] Built target overlayengine Linking CXX shared module ../../../lib/orbitalengine.so [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonmeshgenerator.cxx.o [ 31%] Linking CXX shared module ../../../lib/ringengine.so Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o Linking CXX shared module ../../../lib/hbondengine.so Linking CXX shared module ../../../lib/labelengine.so [ 31%] Built target dipoleengine [ 31%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o [ 31%] Built target stickengine [ 32%] [ 32%] Generating qrc_autoopttool.cxx Built target sphereengine [ 32%] [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o Built target orbitalengine [ 32%] Generating moc_autoopttool.cxx [ 32%] [ 32%] Built target ribbonengine Generating qrc_autorotatetool.cxx [ 32%] [ 32%] Generating moc_autorotatetool.cxx Generating qrc_bondcentrictool.cxx [ 33%] [ 33%] [ 33%] Generating moc_bondcentrictool.cxx [ 33%] Generating moc_clickmeasuretool.cxx Generating qrc_clickmeasuretool.cxx Linking CXX shared module ../../../lib/cartoonengine.so [ 33%] Built target ringengine [ 34%] Generating moc_skeletontree.cxx Built target hbondengine [ 34%] Scanning dependencies of target autoopttool [ 35%] Generating qrc_drawtool.cxx Scanning dependencies of target clickmeasuretool Generating moc_drawtool.cxx [ 35%] Scanning dependencies of target autorotatetool Generating moc_drawcommand.cxx Scanning dependencies of target bondcentrictool [ 35%] Generating qrc_manipulatetool.cxx [ 35%] /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/tools/drawcommand.h:0: Warning: No relevant classes found. No output generated. Generating qrc_navigatetool.cxx Scanning dependencies of target drawtool [ 35%] [ 36%] Generating moc_navigatetool.cxx Generating qrc_selectrotatetool.cxx [ 36%] Linking CXX shared module ../../../lib/surfaceengine.so [ 36%] Generating moc_selectrotatetool.cxx [ 36%] [ 36%] Generating moc_manipulatetool.cxx Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o [ 36%] [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o Generating moc_eyecandy.cxx /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/tools/eyecandy.h:0: Warning: No relevant classes found. No output generated. [ 36%] Built target labelengine [ 37%] Generating ui_navigatesettingswidget.h [ 37%] Generating qrc_animation.cxx [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o [ 37%] [ 37%] Generating moc_animationextension.cxx [ 37%] Generating moc_eyecandy.cxx Scanning dependencies of target navigatetool Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/tools/eyecandy.h:0: Warning: No relevant classes found. No output generated. [ 38%] [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o Generating moc_animationdialog.cxx Scanning dependencies of target selectrotatetool Scanning dependencies of target manipulatetool [ 38%] [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o Generating moc_povpainter.cxx [ 39%] [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/povpainter.h:0: Warning: No relevant classes found. No output generated. [ 39%] Generating moc_trajvideomaker.cxx /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/trajvideomaker.h:0: Warning: No relevant classes found. No output generated. [ 39%] [ 39%] Generating ui_animationdialog.h [ 39%] Built target cartoonengine Built target surfaceengine [ 39%] [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o Scanning dependencies of target animationextension Linking CXX shared module ../../../lib/wireengine.so Linking CXX shared module ../../../lib/aligntool.so [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o [ 39%] Generating ui_fileimportdialog.h [ 40%] Generating moc_fileimportextension.cxx Scanning dependencies of target fileimportextension [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o [ 40%] [ 40%] Built target wireengine Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o [ 40%] [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o Built target aligntool [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o [ 41%] Linking CXX shared module ../../../lib/clickmeasuretool.so Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o Linking CXX shared module ../../../lib/autorotatetool.so [ 41%] Generating ui_conformersearchdialog.h [ 42%] Generating moc_forcefieldextension.cxx [ 42%] [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o [ 42%] Generating moc_forcefielddialog.cxx [ 42%] Generating moc_constraintsdialog.cxx [ 42%] Generating moc_constraintsmodel.cxx [ 42%] [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o [ 42%] [ 42%] Built target clickmeasuretool [ 42%] [ 42%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o Built target autorotatetool [ 43%] [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_eyecandy.cxx.o Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o Generating moc_conformersearchdialog.cxx [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_eyecandy.cxx.o [ 43%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o [ 43%] Generating ui_forcefielddialog.h [ 43%] [ 44%] Generating ui_constraintsdialog.h Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawcommand.cxx.o [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o [ 44%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o [ 44%] [ 44%] Scanning dependencies of target forcefieldextension Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o [ 45%] Generating ui_gamessefpmatchdialog.h [ 45%] [ 46%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o Linking CXX shared module ../../../lib/drawtool.so Generating moc_gamessextension.cxx Linking CXX shared module ../../../lib/selectrotatetool.so [ 46%] [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o [ 47%] Generating ui_mopacinputdialog.h [ 47%] Generating moc_gaussianextension.cxx Generating moc_gamessinputdialog.cxx [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o [ 47%] [ 47%] [ 47%] Generating moc_h2methylextension.cxx Generating moc_qcheminputdialog.cxx Generating moc_gaussianinputdialog.cxx [ 47%] Linking CXX shared module ../../../lib/bondcentrictool.so [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o Linking CXX shared module ../../../lib/fileimportextension.so [ 47%] Generating moc_gamessinputdata.cxx Scanning dependencies of target h2methylextension [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o [ 47%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/gamessinputdata.h:0: Warning: No relevant classes found. No output generated. [ 47%] Generating moc_molproinputdialog.cxx Generating moc_gamesshighlighter.cxx Linking CXX shared module ../../../lib/navigatetool.so [ 47%] [ 47%] Generating moc_gamessefpmatchdialog.cxx Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o [ 48%] Linking CXX shared module ../../../lib/manipulatetool.so Generating moc_nwcheminputdialog.cxx Linking CXX shared module ../../../lib/autoopttool.so [ 48%] Generating ui_gamessinputdialog.h [ 48%] Generating moc_mopacinputdialog.cxx Scanning dependencies of target gamessextension [ 48%] Built target fileimportextension [ 48%] Built target drawtool [ 48%] [ 48%] Generating ui_gaussianinputdialog.h [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o Built target selectrotatetool [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o [ 48%] Generating ui_qcheminputdialog.h [ 48%] Generating ui_molproinputdialog.h [ 48%] Generating ui_nwcheminputdialog.h [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o Scanning dependencies of target gaussianextension [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessextension.cpp.o [ 48%] Built target bondcentrictool [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o [ 48%] [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o [ 48%] Built target autoopttool [ 49%] Built target navigatetool Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o [ 49%] Built target manipulatetool [ 49%] [ 49%] [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/gaussianextension.cpp.o Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o Linking CXX shared module ../../../lib/h2methylextension.so [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_povpainter.cxx.o [ 51%] [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_trajvideomaker.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/gaussianinputdialog.cpp.o [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/qcheminputdialog.cpp.o [ 51%] [ 51%] Built target h2methylextension [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animation.cxx.o [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o [ 52%] Generating moc_hydrogensextension.cxx Linking CXX shared module ../../../lib/animationextension.so Scanning dependencies of target hydrogenextension [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/hydrogensextension.cpp.o [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogenextension.dir/moc_hydrogensextension.cxx.o [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/molproinputdialog.cpp.o [ 52%] Generating ui_insertfragmentdialog.h [ 52%] Generating moc_insertfragmentextension.cxx [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/nwcheminputdialog.cpp.o [ 53%] [ 53%] Generating moc_directorytreemodel.cxx Built target animationextension [ 53%] Generating moc_insertfragmentdialog.cxx [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessinputdata.cxx.o [ 54%] Generating moc_insertcommand.cxx /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/insertcommand.h:0: Warning: No relevant classes found. No output generated. Scanning dependencies of target insertfragmentextension [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/mopacinputdialog.cpp.o [ 54%] [ 54%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o [ 54%] Generating ui_insertpeptidedialog.h Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_gaussianextension.cxx.o [ 55%] Generating moc_insertpeptideextension.cxx [ 55%] [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o Linking CXX shared module ../../../lib/hydrogenextension.so Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/directorytreemodel.cpp.o Scanning dependencies of target insertpeptideextension [ 56%] Generating ui_molecularpropdialog.h [ 56%] [ 56%] Generating moc_molecularpropextension.cxx Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o [ 56%] Generating moc_networkfetchextension.cxx Scanning dependencies of target molecularpropextension Scanning dependencies of target networkfetchextension [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o [ 56%] [ 56%] Built target hydrogenextension [ 56%] [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertcommand.cxx.o [ 56%] Generating ui_orbitaldialog.h [ 56%] Generating moc_orbitalextension.cxx [ 56%] Generating ui_povraydialog.h [ 56%] Generating moc_orbitaldialog.cxx [ 56%] Generating moc_povrayextension.cxx [ 57%] Generating moc_basisset.cxx [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_gaussianinputdialog.cxx.o [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o [ 57%] Generating moc_gaussianfchk.cxx [ 57%] /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/gaussianfchk.h:0: Warning: No relevant classes found. No output generated. [ 57%] Generating moc_povraydialog.cxx Generating moc_slaterset.cxx Scanning dependencies of target povrayextension [ 57%] Generating moc_mopacaux.cxx [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/mopacaux.h:0: Warning: No relevant classes found. No output generated. [ 57%] Generating moc_molpro.cxx /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/molpro.h:0: Warning: No relevant classes found. No output generated. [ 57%] [ 57%] Linking CXX shared module ../../../lib/forcefieldextension.so Generating moc_vdwsurface.cxx [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_directorytreemodel.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o [ 59%] Generating __/__/qtiocompressor/moc_qtiocompressor.cxx [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o Scanning dependencies of target orbitalextension [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_qcheminputdialog.cxx.o Linking CXX shared module ../../../lib/networkfetchextension.so Linking CXX shared module ../../../lib/molecularpropextension.so [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_molproinputdialog.cxx.o Linking CXX shared module ../../../lib/insertpeptideextension.so [ 59%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o [ 59%] Built target forcefieldextension [ 60%] [ 60%] [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/orbitaldialog.cpp.o Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povpainter.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertcommand.cxx.o [ 60%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o [ 60%] Built target insertpeptideextension [ 61%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/basisset.cpp.o [ 61%] [ 61%] [ 61%] Built target networkfetchextension Built target molecularpropextension [ 61%] Generating moc_propextension.cxx [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_nwcheminputdialog.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/gaussianfchk.cpp.o [ 63%] Generating __/tools/moc_skeletontree.cxx [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/slaterset.cpp.o [ 63%] Generating moc_propmodel.cxx [ 63%] Generating ui_pythonterminalwidget.h [ 63%] [ 63%] Generating moc_pythonterminal.cxx Generating moc_highlighter.cxx [ 63%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/mopacaux.cpp.o Scanning dependencies of target propextension Linking CXX shared module ../../../lib/insertfragmentextension.so Scanning dependencies of target pythonterminal [ 64%] Linking CXX shared module ../../../lib/gamessextension.so [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o Generating moc_selectextension.cxx [ 65%] Generating ui_shaderdialog.h Scanning dependencies of target selectextension [ 65%] Generating moc_shaderextension.cxx Linking CXX shared module ../../../lib/povrayextension.so Scanning dependencies of target shaderextension [ 65%] [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o [ 65%] [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/gaussianextension.dir/moc_mopacinputdialog.cxx.o [ 65%] [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o Built target insertfragmentextension [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o [ 65%] Built target gamessextension [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o [ 65%] Built target povrayextension [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o Linking CXX shared module ../../../lib/gaussianextension.so [ 65%] Generating ui_spectratabnmr.h [ 65%] Generating moc_spectraextension.cxx [ 65%] Generating moc_spectradialog.cxx [ 65%] Generating moc_spectratype.cxx [ 65%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/molpro.cpp.o [ 66%] [ 66%] Generating moc_spectratype_ir.cxx Generating ui_supercelldialog.h [ 66%] Generating moc_supercellextension.cxx [ 66%] [ 66%] [ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o Generating moc_spectratype_nmr.cxx Generating moc_supercelldialog.cxx [ 66%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o Scanning dependencies of target supercellextension /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/shaderextension.cpp: In member function 'void Avogadro::ShaderExtension::loadShaders()': /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/shaderextension.cpp:387: error: 'INSTALL_PREFIX' was not declared in this scope make[2]: *** [libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o] Error 1 [ 66%] [ 67%] Generating ui_spectradialog.h Generating ui_unitcellparamdialog.h make[1]: *** [libavogadro/src/extensions/CMakeFiles/shaderextension.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 67%] Generating ui_spectratabir.h [ 67%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o [ 67%] Generating moc_unitcellextension.cxx Scanning dependencies of target spectraextension [ 67%] Linking CXX shared module ../../../lib/selectextension.so Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o [ 67%] Generating moc_unitcellparamdialog.cxx [ 67%] Built target gaussianextension [ 68%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o [ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/__/__/qtiocompressor/qtiocompressor.cpp.o Scanning dependencies of target unitcellextension [ 69%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectraextension.cpp.o [ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellextension.cpp.o [ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/unitcellparamdialog.cpp.o [ 70%] [ 70%] Built target selectextension [ 70%] [ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o [ 70%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o [ 71%] Linking CXX shared module ../../../lib/propextension.so Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o [ 71%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_orbitaldialog.cxx.o [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectradialog.cpp.o [ 72%] In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:160:1: warning: this is the location of the previous definition Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype.cpp.o [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_basisset.cxx.o [ 72%] [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellextension.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_ir.cpp.o [ 72%] Built target propextension [ 72%] [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_gaussianfchk.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/unitcellextension.dir/moc_unitcellparamdialog.cxx.o [ 72%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/spectratype_nmr.cpp.o [ 72%] [ 72%] [ 73%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_mopacaux.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_slaterset.cxx.o [ 74%] [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_molpro.cxx.o [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_ir.cxx.o Linking CXX shared module ../../../lib/supercellextension.so [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/spectraextension.dir/moc_spectratype_nmr.cxx.o [ 74%] Building CXX object libavogadro/src/extensions/CMakeFiles/orbitalextension.dir/__/__/qtiocompressor/moc_qtiocompressor.cxx.o Linking CXX shared module ../../../lib/unitcellextension.so In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: /usr/include/python2.6/pyconfig.h:1052:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: /usr/include/features.h:158:1: warning: this is the location of the previous definition In file included from /usr/include/boost-1_37/boost/python/detail/wrap_python.hpp:50, from /usr/include/boost-1_37/boost/python/detail/prefix.hpp:13, from /usr/include/boost-1_37/boost/python/args.hpp:8, from /usr/include/boost-1_37/boost/python.hpp:11, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/../pythoninterpreter.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:30, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: /usr/include/python2.6/pyconfig.h:1064:1: warning: "_XOPEN_SOURCE" redefined In file included from /usr/include/string.h:26, from /usr/include/qt4/QtCore/qbytearray.h:48, from /usr/include/qt4/QtCore/qstring.h:46, from /usr/include/qt4/QtCore/qobject.h:48, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/global.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/plugin.h:29, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/include/avogadro/extension.h:28, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/../../../../avogadro-0.9.6/libavogadro/src/extensions/pythonterminal.h:26, from /var/tmp/portage/sci-chemistry/avogadro-0.9.6/work/avogadro-0.9.6_build/libavogadro/src/extensions/moc_pythonterminal.cxx:10: /usr/include/features.h:160:1: warning: this is the location of the previous definition Linking CXX shared module ../../../lib/pythonterminal.so Linking CXX shared module ../../../lib/orbitalextension.so [ 74%] Built target supercellextension [ 74%] Built target unitcellextension [ 74%] Built target pythonterminal [ 74%] Built target orbitalextension Linking CXX shared module ../../../lib/spectraextension.so [ 74%] Built target spectraextension make: *** [all] Error 2 * * ERROR: sci-chemistry/avogadro-0.9.6 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 3003: Called cmake-utils_src_compile * environment, line 870: Called cmake-utils_src_make * environment, line 949: Called die * The specific snippet of code: * emake "$@" || die "Make failed!"; * The die message: * Make failed! * * If you need support, post the topmost build error, and the call stack if relevant. * A complete build log is located at '/var/log/portage/sci-chemistry/avogadro-0.9.6:20090709-195007.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/avogadro-0.9.6/temp/environment'. *