231027 – biopython-1.47 is out

Bug 231027 - biopython-1.47 is out

Summary: biopython-1.47 is out

Status:	RESOLVED INVALID

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	High normal (vote)
Assignee:	Gentoo Science Biology related packages

URL:	http://biopython.open-bio.org/SRC/bio...
Whiteboard:
Keywords:

Depends on:
Blocks:

Reported:	2008-07-07 07:41 UTC by Bjoern Thorwirth
Modified:	2008-07-07 11:49 UTC (History)
CC List:	2 users (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
ebuild for biopython-1.47 (biopython-1.44.ebuild.patch,576 bytes, patch) 2008-07-07 11:13 UTC, Bjoern Thorwirth	Details \| Diff
fixed ebuild patch ^-^ (biopython-1.44.ebuild.patch,503 bytes, text/plain) 2008-07-07 11:32 UTC, Bjoern Thorwirth	Details
emerge --info (emerge--info.out,5.01 KB, text/plain) 2008-07-07 11:34 UTC, Bjoern Thorwirth	Details
View All Add an attachment (proposed patch, testcase, etc.)

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Description Bjoern Thorwirth 2008-07-07 07:41:48 UTC

biopython-1.47 is out.. biopython in gentoo has'nt got a versionbump for some time now.. Do you need help?

cheers,
Björn



Reproducible: Always

Comment 1 (RETIRED) gentoo-dev

2008-07-07 07:53:37 UTC

Have you checked whether the current ebuild works for the new version and if not what modifications are needed?

Comment 2 Bjoern Thorwirth 2008-07-07 11:13:53 UTC

Created attachment 159784 [details, diff]
ebuild for biopython-1.47

The Patch to got it working with 1.47

I omitted the sequtils-complement patch
We can still use the KD-Tree patch 


I've testet the installation with the shipped tests. everything looks good here. I also did the test mentioned here: http://bugs.gentoo.org/show_bug.cgi?id=221159 - looks good, also.

Comment 3 Bjoern Thorwirth 2008-07-07 11:32:59 UTC

Created attachment 159785 [details]
fixed ebuild patch ^-^

Comment 4 Bjoern Thorwirth 2008-07-07 11:34:15 UTC

Created attachment 159787 [details]
emerge --info

x86 here .. my emerge --info

Comment 5 Bjoern Thorwirth 2008-07-07 11:49:42 UTC

Ah .. sorry..  Olivier Fisette added the updated ebuild yesterday. My tree was synced last time saturday.. 

Thanks anyway :)