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Bug#: 54329
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Status: RESOLVED
Resolution: FIXED
Assigned To: Gentoo Science Related Packages <sci@gentoo.org>
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Reporter: Olivier Fisette <ribosome@gentoo.org>
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Filename Description Type Creator Created Size Actions
emboss-2.8.0-r3.ebuild emboss-2.8.0-r3.ebuild text/plain Olivier Fisette 2004-06-18 08:56 0000 4.04 KB Details
emboss-2.8.0-r3.ebuild emboss-2.8.0-r3.ebuild text/plain Olivier Fisette 2004-06-24 20:53 0000 1.79 KB Details
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Bug 54329 depends on: 45945 54036 54319 54322 54325 54326 54327 Show dependency tree
Bug 54329 blocks:
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Description:   Opened: 2004-06-18 08:56 0000 
The ebuild I will attach provides some improvements to the 
app-sci/emboss package. Here is what I did:

- Added optional installation of EMBASSY. (Extra EMBOSS programs)
- Improved dependencies and build configuration. (It is now possible to
  integrate png support without X support.)
- Added optional support for primer3 and clustalw. (EMBOSS offers user 
  interfaces for these two programs.)
- Added optional support for biological databases used by some EMBOSS programs.
- Added support for Intel's C++ compiler.
- Made JEMBOSS (Java client/server user interface) optional.

Reproducible: Always
Steps to Reproduce:
1.
2.
3.

------- Comment #1 From Olivier Fisette 2004-06-18 08:56:59 0000 ------- 
Created an attachment (id=33499) [details]
emboss-2.8.0-r3.ebuild

------- Comment #2 From Olivier Fisette 2004-06-24 20:53:26 0000 ------- 
Created an attachment (id=34105) [details]
emboss-2.8.0-r3.ebuild

Changed a few things:
- Dependencies are now mandatory, so a user who types 'emerge emboss' has a
  fully working EMBOSS installation. (Installation of biological databases may 
  still be turned off using the no-biodata local USE flag.)
- Removed EMBASSY programs. I will make a separate package for them.
- Removed JEMBOSS. I will make a separate package for it.

------- Comment #3 From Olivier Fisette 2004-07-15 06:47:45 0000 ------- 
In CVS. ~ppc is on emboss-2.8.0-r2, if someone could test the new revision on
this platform, that would be nice. (Dependencies such as clustalw, primer3, and
the databases aaindex, cutg, prints, prosite, rebase and transfac will have to
be tested too.)
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