The ebuild I will attach provides some improvements to the app-sci/emboss package. Here is what I did: - Added optional installation of EMBASSY. (Extra EMBOSS programs) - Improved dependencies and build configuration. (It is now possible to integrate png support without X support.) - Added optional support for primer3 and clustalw. (EMBOSS offers user interfaces for these two programs.) - Added optional support for biological databases used by some EMBOSS programs. - Added support for Intel's C++ compiler. - Made JEMBOSS (Java client/server user interface) optional. Reproducible: Always Steps to Reproduce: 1. 2. 3.
Created attachment 33499 [details] emboss-2.8.0-r3.ebuild
Created attachment 34105 [details] emboss-2.8.0-r3.ebuild Changed a few things: - Dependencies are now mandatory, so a user who types 'emerge emboss' has a fully working EMBOSS installation. (Installation of biological databases may still be turned off using the no-biodata local USE flag.) - Removed EMBASSY programs. I will make a separate package for them. - Removed JEMBOSS. I will make a separate package for it.
In CVS. ~ppc is on emboss-2.8.0-r2, if someone could test the new revision on this platform, that would be nice. (Dependencies such as clustalw, primer3, and the databases aaindex, cutg, prints, prosite, rebase and transfac will have to be tested too.)
