Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 54036 - primer3-0.9 (New ebuild)
Summary: primer3-0.9 (New ebuild)
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Gentoo Science Related Packages
URL: http://frodo.wi.mit.edu/primer3/prime...
Whiteboard:
Keywords:
Depends on:
Blocks: 54329
  Show dependency tree
 
Reported: 2004-06-15 16:54 UTC by Olivier Fisette (RETIRED)
Modified: 2004-06-23 10:26 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
primer3-0.9.ebuild (primer3-0.9.ebuild,506 bytes, text/plain)
2004-06-15 17:37 UTC, Olivier Fisette (RETIRED) 		Details
metadata.xml (metadata.xml,616 bytes, text/plain)
2004-06-15 17:38 UTC, Olivier Fisette (RETIRED) 		Details
whitehead - License for primer3 (whitehead,1.83 KB, text/plain)
2004-06-15 17:40 UTC, Olivier Fisette (RETIRED) 		Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Olivier Fisette (RETIRED) gentoo-dev 2004-06-15 16:54:19 UTC 
primer3 is a program for picking PCR primers. It is very sophisticated, considering positional constraints and criteria such as primer-dimer possibilities, and, of course, primer length, CG content, melting temperature, and PCR fragment length.

EMBOSS, which is already in Portage, requires primer3 for the eprimer3 program.

Reproducible: Always
Steps to Reproduce:
1.
2.
3.
Comment 1 Olivier Fisette (RETIRED) gentoo-dev 2004-06-15 17:37:21 UTC 
Created attachment 33344 [details]
primer3-0.9.ebuild
Comment 2 Olivier Fisette (RETIRED) gentoo-dev 2004-06-15 17:38:06 UTC 
Created attachment 33345 [details]
metadata.xml

- Suggests the sci herd
- Provides long description
Comment 3 Olivier Fisette (RETIRED) gentoo-dev 2004-06-15 17:40:12 UTC 
Created attachment 33346 [details]
whitehead - License for primer3
Comment 4 Olivier Fisette (RETIRED) gentoo-dev 2004-06-23 10:26:39 UTC 
Commited.