Bug 350233 – sci-libs/ccp4-libs-6.1.3-r7 please stable

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Justin Lecher (RETIRED) 2010-12-31 17:04:09 UTC]

Please quickly stable this one. Same as last version. It just installs half a dozen files in addition in /usr/share/ccp4 which have no influence on this package, only on a testsuite of reverse deps.

[Comment 1 Agostino Sarubbo 2011-01-01 01:13:35 UTC]

cp -p `pwd`/./libccp4c.a /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/./libccp4c.a
cp -p `pwd`/./libccp4f.a /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/./libccp4f.a
cp -p `pwd`/libmmdb.so /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/libmmdb.so; cp -p `pwd`/libccp4c.so /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/libccp4c.so; cp -p `pwd`/libccp4f.so /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/libccp4f.so; 

cp: cannot stat `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory

make[1]: Leaving directory `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/src'
make[1]: Entering directory `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/ssm'
make[2]: Entering directory `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/ssm'

[Comment 2 Justin Lecher (RETIRED) 2011-01-01 08:02:42 UTC]

(In reply to comment #1)
> cp -p `pwd`/./libccp4c.a
> /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/./libccp4c.a
> cp -p `pwd`/./libccp4f.a
> /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/./libccp4f.a
> cp -p `pwd`/libmmdb.so
> /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/libmmdb.so; cp -p
> `pwd`/libccp4c.so
> /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/libccp4c.so; cp -p
> `pwd`/libccp4f.so
> /tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/image///usr/lib64/libccp4f.so; 
> 
> cp: cannot stat
> `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/src/libmmdb.so':
> No such file or directory
> 
> make[1]: Leaving directory
> `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/src'
> make[1]: Entering directory
> `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/ssm'
> make[2]: Entering directory
> `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r4/work/ccp4-6.1.3/lib/ssm'
> 

As always, please attach full buildlog

[Comment 3 Justin Lecher (RETIRED) 2011-01-01 08:08:26 UTC]

And you tested the wrong version. That one is allready stable

[Comment 4 Justin Lecher (RETIRED) 2011-01-01 08:09:31 UTC]

And it is totally wanted behaviour.

[Comment 5 Agostino Sarubbo 2011-01-01 11:39:47 UTC]

Created attachment 258562 [details]
Build log

sorry, my bad but r5 have same problem

cp: cannot stat `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r5/work/ccp4-6.1.3/lib/src/libmmdb.so': No such file or directory

[Comment 6 Justin Lecher (RETIRED) 2011-01-01 15:03:38 UTC]

(In reply to comment #5)
> Created an attachment (id=258562) [details]
> Build log
> 
> sorry, my bad but r5 have same problem
> 
> cp: cannot stat
> `/tmp/portage/sci-libs/ccp4-libs-6.1.3-r5/work/ccp4-6.1.3/lib/src/libmmdb.so':
> No such file or directory
> 

So I don't see a problem. ccp4-libs -6.1.4-r4/5 do not bring libmmdb.so. It comes from sci-libs/mmdb. So this is neither a bug nor something to be concerned about.

[Comment 7 Agostino Sarubbo 2011-01-01 16:42:18 UTC]

(In reply to comment #6)
> So I don't see a problem. ccp4-libs -6.1.4-r4/5 do not bring libmmdb.so. It
> comes from sci-libs/mmdb. So this is neither a bug nor something to be
> concerned about.

ok, nothing

amd64 ok

[Comment 8 Thomas Kahle (RETIRED) 2011-01-02 00:00:38 UTC]

x86 done.

[Comment 9 Justin Lecher (RETIRED) 2011-01-10 21:01:38 UTC]

I am really sorry to come up again, but I need this version stabled. It simply a minor change, moving some code from sci-chemistry/ccp4-apps to here, so that refmac just needs to depend on ccp4-libs, not on the whole bundle. Basically it now installs two more files in /etc/profile.d, so no real change for AT.

[Comment 10 Agostino Sarubbo 2011-01-11 17:39:13 UTC]

ok on amd64

[Comment 11 Markos Chandras (RETIRED) 2011-01-12 16:53:58 UTC]

amd64 done. Thanks Agostino

[Comment 12 Kacper Kowalik (Xarthisius) (RETIRED) 2011-01-16 12:42:11 UTC]

ppc will pass here

[Comment 13 Thomas Kahle (RETIRED) 2011-01-16 21:47:26 UTC]

x86 done. closing.