config.status: executing libtool commands make all-recursive make[1]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2' Making all in f90 make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/f90' /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -g -O2 -c -o typeSizes.lo typeSizes.f90 /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -g -O2 -c -o netcdf.lo netcdf.f90 libtool: compile: gfortran -I../libsrc -I. -g -O2 -c netcdf.f90 -fPIC -o .libs/netcdf.o In file netcdf.f90:38 FourByteReal, EightByteReal 1 Fatal Error: Can't open module file 'typesizes.mod' for reading at (1): No such file or directory make[2]: *** [netcdf.lo] Error 1 make[2]: *** Waiting for unfinished jobs.... libtool: compile: gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90 -fPIC -o .libs/typeSizes.o libtool: compile: gfortran -I../libsrc -I. -g -O2 -c typeSizes.f90 -o typeSizes.o >/dev/null 2>&1 make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2/f90' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.2/work/netcdf-3.6.2' make: *** [all] Error 2 Looks like a parallel make error.
Created attachment 126885 [details, diff] typesizes.mod-parallel-make.patch Patch.
Fixed. Thanks.
*** Bug 193300 has been marked as a duplicate of this bug. ***
That didn't work, Bug 193300
Hi I could not reproduce the failure with -j3, but with -j2 I could. I commited a new patch which I think should take care of it. Please re-sync, re-emerge and let me know. Sebastien
Was fixed a while ago.
I'm still seeing this today. Ed's patch is included, but I'm not sure what Sebastien did to try to fix this. The error is identical to comment #0. Portage 2.1.6.13 (default/linux/amd64/10.0, gcc-4.1.2, glibc-2.9_p20081201-r2, 2.6.23-gentoo-r3-2007122801 x86_64) ================================================================= System uname: Linux-2.6.23-gentoo-r3-2007122801-x86_64-AMD_Athlon-tm-_64_Processor_3700+-with-glibc2.2.5 Timestamp of tree: Sun, 06 Dec 2009 06:15:01 +0000 ccache version 2.4 [disabled] app-shells/bash: 4.0_p28 dev-lang/python: 2.4.4-r13, 2.5.4-r3 dev-python/pycrypto: 2.0.1-r8 dev-util/ccache: 2.4-r7 dev-util/cmake: 2.4.6-r1 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=k8 -msse3 -Os -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/udev/rules.d" CXXFLAGS="-O2 -pipe -march=k8 -msse3 -Os -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://mirror.mcs.anl.gov/pub/gentoo/" LDFLAGS="-Wl,-O1" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.us.gentoo.org/gentoo-portage" USE="acl amd64 apache2 berkdb bzip2 cli cracklib crypt cups cxx dri fortran gdbm gpm iconv ipv6 jpeg mmx modules mudflap multilib ncurses nls nptl nptlonly openmp pam pcre perl png pppd python readline reflection session spl sse sse2 ssl sysfs tcpd threads unicode vhosts xml xml2 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="access auth auth_basic authn_file auth_dbm auth_anon auth_digest authz_host authz_user alias file-cache filter echo charset-lite cache disk-cache mem-cache ext-filter case_filter case-filter-in deflate mime-magic cern-meta expires headers unique-id proxy proxy_http proxy_connect info include cgi cgid dav dav-fs vhost-alias rewrite log_config logio env setenvif mime status autoindex asis negotiation dir imap actions userdir so" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nv r128 radeon savage sis tdfx trident vesa vga via vmware voodoo" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Reopen, bug 323015 still reports this issue.
*** Bug 323015 has been marked as a duplicate of this bug. ***
netcdf-3.6.2 is not in the tree anymore. Could you try with 3.6.3, and if it does fail, try with unmasked 4.1.1? Thanks.
Still fails, although note that as a race condition this only fails *sometimes* - I had to run 'emerge' in a loop for a half-hour or so to replicate. make[2]: Entering directory `/var/tmp/portage/sci-libs/netcdf-3.6.3/work/netcdf-3.6.3/f90' /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -O2 -c -o typeSizes.lo typeSizes.f90 /bin/sh ../libtool --mode=compile gfortran -I../libsrc -I. -O2 -c -o netcdf.lo netcdf.f90 gfortran -I../libsrc -I. -O2 -c -o typeSizes.o typeSizes.f90 gfortran -I../libsrc -I. -O2 -c -o netcdf.o netcdf.f90 In file netcdf.f90:38 FourByteReal, EightByteReal 1 Fatal Error: Can't open module file 'typesizes.mod' for reading at (1): No such file or directory make[2]: *** [netcdf.o] Error 1 make[2]: *** Waiting for unfinished jobs.... libtool: compile: gfortran -I../libsrc -I. -O2 -c typeSizes.f90 -fPIC -o .libs/typeSizes.o libtool: compile: gfortran -I../libsrc -I. -O2 -c netcdf.f90 -fPIC -o .libs/netcdf.o libtool: compile: gfortran -I../libsrc -I. -O2 -c typeSizes.f90 -o typeSizes.o >/dev/null 2>&1 libtool: compile: gfortran -I../libsrc -I. -O2 -c netcdf.f90 -o netcdf.o >/dev/null 2>&1 make[2]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.3/work/netcdf-3.6.3/f90' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/sci-libs/netcdf-3.6.3/work/netcdf-3.6.3' make: *** [all] Error 2 I can't change the bug topic, but it should be updated.
I have tried various combinations of -j<N> and still can not reproduce your failure. Have you also tried netcdf-4.1.1?
4.1.1 is working fine so far - I've probably done ~100 iterations, which was enough to trigger the failure in previous versions. I'll leave it running and report back if it does eventually fail.
I included upstreams version off the patch. Thanks for your contribution.
