build log

scientificpython-2.9:01022010.log (text/plain), 10.54 KB, created by Kacper Kowalik (Xarthisius) (RETIRED) on 2010-02-01 23:07:39 UTC

 [32;01m*[0m CPV:  dev-python/scientificpython-2.9
 [32;01m*[0m REPO: gentoo
 [32;01m*[0m USE:  amd64 elibc_glibc kernel_linux mpi multilib userland_GNU
>>> Unpacking source...
>>> Unpacking ScientificPython-2.9.tar.gz to /var/tmp/portage/dev-python/scientificpython-2.9/work
>>> Source unpacked in /var/tmp/portage/dev-python/scientificpython-2.9/work
>>> Preparing source in /var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0 ...
 [32;01m*[0m Applying scientificpython-2.9-mpi.patch ...
[A[128C  [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0 ...
 [1;32m*[0m [1;34mBuilding of dev-python/scientificpython-2.9 with Python 2.6...[0m
python2.6 setup.py build -b build-2.6
Using netCDF installation in  /usr
running build
running build_py
creating build-2.6
creating build-2.6/lib.linux-x86_64-2.6
creating build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/FFT.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/N.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/NRNG.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/indexing.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/NumberDict.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/Mathematica.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/DictWithDefault.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/LA.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
copying Scientific/__pkginfo__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Clustering
copying Scientific/Clustering/AffinityPropagation.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Clustering
copying Scientific/Clustering/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Clustering
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/Rational.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/Interpolation.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/Derivatives.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/FindRoot.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/Polynomial.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/FirstDerivatives.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/Romberg.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
copying Scientific/Functions/LeastSquares.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/Objects3D.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/VectorModule.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/Quaternion.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/Transformation.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/TensorModule.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
copying Scientific/Geometry/TensorAnalysis.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry
creating build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/FortranFormat.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/TextFile.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/PDBSpaceGroups.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/ArrayIO.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/NetCDF.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/PDBExportFilters.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
copying Scientific/IO/PDB.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Physics
copying Scientific/Physics/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Physics
copying Scientific/Physics/Potential.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Physics
copying Scientific/Physics/PhysicalQuantities.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Physics
creating build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets
copying Scientific/QtWidgets/QtVisualizationCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets
copying Scientific/QtWidgets/qt_fake.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets
copying Scientific/QtWidgets/QtPlotCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets
copying Scientific/QtWidgets/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Statistics
copying Scientific/Statistics/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Statistics
copying Scientific/Statistics/Histogram.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Statistics
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Signals
copying Scientific/Signals/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Signals
copying Scientific/Signals/Models.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Signals
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Threading
copying Scientific/Threading/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Threading
copying Scientific/Threading/TaskManager.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Threading
creating build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/TkVisualizationCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/Utility.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets
copying Scientific/TkWidgets/TkPlotCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets
creating build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/VPython.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/PyMOL.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/VRML.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/VMD.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/Color.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
copying Scientific/Visualization/VRML2.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization
creating build-2.6/lib.linux-x86_64-2.6/Scientific/MPI
copying Scientific/MPI/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/MPI
copying Scientific/MPI/core.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/MPI
copying Scientific/MPI/IO.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/MPI
creating build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing
copying Scientific/DistributedComputing/MasterSlave.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing
copying Scientific/DistributedComputing/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing
copying Scientific/DistributedComputing/TaskManager.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing
creating build-2.6/lib.linux-x86_64-2.6/Scientific/BSP
copying Scientific/BSP/Console.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP
copying Scientific/BSP/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP
copying Scientific/BSP/core.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP
copying Scientific/BSP/IO.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP
copying Scientific/BSP/RemoteObjects.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP
warning: build_py: byte-compiling is disabled, skipping.
running build_ext
building 'Scientific_netcdf' extension
creating build-2.6/temp.linux-x86_64-2.6
creating build-2.6/temp.linux-x86_64-2.6/Src
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -march=k8 -pipe -fPIC -IInclude -I/usr/include -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include/python2.6 -c Src/Scientific_netcdf.c -o build-2.6/temp.linux-x86_64-2.6/Src/Scientific_netcdf.o -DNUMPY=1
In file included from Src/Scientific_netcdf.c:22:
/usr/include/netcdf.h:41:17: error: mpi.h: Nie ma takiego pliku ani katalogu
In file included from Src/Scientific_netcdf.c:22:
/usr/include/netcdf.h:367: error: expected declaration specifiers or ‘...’ before ‘MPI_Comm’
/usr/include/netcdf.h:367: error: expected declaration specifiers or ‘...’ before ‘MPI_Info’
/usr/include/netcdf.h:371: error: expected declaration specifiers or ‘...’ before ‘MPI_Comm’
/usr/include/netcdf.h:371: error: expected declaration specifiers or ‘...’ before ‘MPI_Info’
error: command 'x86_64-pc-linux-gnu-gcc' failed with exit status 1
 [31;01m*[0m ERROR: dev-python/scientificpython-2.9 failed:
 [31;01m*[0m   Building failed with Python 2.6 in building() function
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   54:  Called src_compile
 [31;01m*[0m   environment, line 3564:  Called distutils_src_compile
 [31;01m*[0m   environment, line  830:  Called python_execute_function 'building'
 [31;01m*[0m   environment, line 2950:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m                       die "${failure_message}";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =dev-python/scientificpython-2.9',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =dev-python/scientificpython-2.9'.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-python/scientificpython-2.9/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-python/scientificpython-2.9/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0'