* CPV: dev-python/scientificpython-2.9 * REPO: gentoo * USE: amd64 elibc_glibc kernel_linux mpi multilib userland_GNU >>> Unpacking source... >>> Unpacking ScientificPython-2.9.tar.gz to /var/tmp/portage/dev-python/scientificpython-2.9/work >>> Source unpacked in /var/tmp/portage/dev-python/scientificpython-2.9/work >>> Preparing source in /var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0 ... * Applying scientificpython-2.9-mpi.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0 ... * Building of dev-python/scientificpython-2.9 with Python 2.6... python2.6 setup.py build -b build-2.6 Using netCDF installation in /usr running build running build_py creating build-2.6 creating build-2.6/lib.linux-x86_64-2.6 creating build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/FFT.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/N.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/NRNG.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/indexing.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/NumberDict.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/Mathematica.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/DictWithDefault.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/LA.py -> build-2.6/lib.linux-x86_64-2.6/Scientific copying Scientific/__pkginfo__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific creating build-2.6/lib.linux-x86_64-2.6/Scientific/Clustering copying Scientific/Clustering/AffinityPropagation.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Clustering copying Scientific/Clustering/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Clustering creating build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/Rational.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/Interpolation.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/Derivatives.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/FindRoot.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/Polynomial.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/FirstDerivatives.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/Romberg.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions copying Scientific/Functions/LeastSquares.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Functions creating build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/Objects3D.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/VectorModule.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/Quaternion.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/Transformation.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/TensorModule.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry copying Scientific/Geometry/TensorAnalysis.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Geometry creating build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/FortranFormat.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/TextFile.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/PDBSpaceGroups.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/ArrayIO.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/NetCDF.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/PDBExportFilters.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO copying Scientific/IO/PDB.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/IO creating build-2.6/lib.linux-x86_64-2.6/Scientific/Physics copying Scientific/Physics/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Physics copying Scientific/Physics/Potential.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Physics copying Scientific/Physics/PhysicalQuantities.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Physics creating build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets copying Scientific/QtWidgets/QtVisualizationCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets copying Scientific/QtWidgets/qt_fake.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets copying Scientific/QtWidgets/QtPlotCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets copying Scientific/QtWidgets/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/QtWidgets creating build-2.6/lib.linux-x86_64-2.6/Scientific/Statistics copying Scientific/Statistics/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Statistics copying Scientific/Statistics/Histogram.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Statistics creating build-2.6/lib.linux-x86_64-2.6/Scientific/Signals copying Scientific/Signals/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Signals copying Scientific/Signals/Models.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Signals creating build-2.6/lib.linux-x86_64-2.6/Scientific/Threading copying Scientific/Threading/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Threading copying Scientific/Threading/TaskManager.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Threading creating build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets copying Scientific/TkWidgets/TkVisualizationCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets copying Scientific/TkWidgets/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets copying Scientific/TkWidgets/Utility.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets copying Scientific/TkWidgets/TkPlotCanvas.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/TkWidgets creating build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/VPython.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/PyMOL.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/VRML.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/VMD.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/Color.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization copying Scientific/Visualization/VRML2.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/Visualization creating build-2.6/lib.linux-x86_64-2.6/Scientific/MPI copying Scientific/MPI/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/MPI copying Scientific/MPI/core.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/MPI copying Scientific/MPI/IO.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/MPI creating build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing copying Scientific/DistributedComputing/MasterSlave.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing copying Scientific/DistributedComputing/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing copying Scientific/DistributedComputing/TaskManager.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/DistributedComputing creating build-2.6/lib.linux-x86_64-2.6/Scientific/BSP copying Scientific/BSP/Console.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP copying Scientific/BSP/__init__.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP copying Scientific/BSP/core.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP copying Scientific/BSP/IO.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP copying Scientific/BSP/RemoteObjects.py -> build-2.6/lib.linux-x86_64-2.6/Scientific/BSP warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'Scientific_netcdf' extension creating build-2.6/temp.linux-x86_64-2.6 creating build-2.6/temp.linux-x86_64-2.6/Src x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -O2 -march=k8 -pipe -fPIC -IInclude -I/usr/include -I/usr/lib/python2.6/site-packages/numpy/core/include -I/usr/include/python2.6 -c Src/Scientific_netcdf.c -o build-2.6/temp.linux-x86_64-2.6/Src/Scientific_netcdf.o -DNUMPY=1 In file included from Src/Scientific_netcdf.c:22: /usr/include/netcdf.h:41:17: error: mpi.h: Nie ma takiego pliku ani katalogu In file included from Src/Scientific_netcdf.c:22: /usr/include/netcdf.h:367: error: expected declaration specifiers or ‘...’ before ‘MPI_Comm’ /usr/include/netcdf.h:367: error: expected declaration specifiers or ‘...’ before ‘MPI_Info’ /usr/include/netcdf.h:371: error: expected declaration specifiers or ‘...’ before ‘MPI_Comm’ /usr/include/netcdf.h:371: error: expected declaration specifiers or ‘...’ before ‘MPI_Info’ error: command 'x86_64-pc-linux-gnu-gcc' failed with exit status 1 * ERROR: dev-python/scientificpython-2.9 failed: * Building failed with Python 2.6 in building() function * * Call stack: * ebuild.sh, line 54: Called src_compile * environment, line 3564: Called distutils_src_compile * environment, line 830: Called python_execute_function 'building' * environment, line 2950: Called die * The specific snippet of code: * die "${failure_message}"; * * If you need support, post the output of 'emerge --info =dev-python/scientificpython-2.9', * the complete build log and the output of 'emerge -pqv =dev-python/scientificpython-2.9'. * The complete build log is located at '/var/tmp/portage/dev-python/scientificpython-2.9/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/scientificpython-2.9/temp/environment'. * S: '/var/tmp/portage/dev-python/scientificpython-2.9/work/ScientificPython-2.9.0'