emerge log

sci-chemistry:openbabel-2.1.1:20080118-203342.log (text/plain), 11.86 KB, created by Marco Clocchiatti on 2008-01-18 20:44:15 UTC

 [32;01m*[0m Determine new optimal TMPFS value: [ 3017M ]
 [32;01m*[0m Mounting /var/tmp/portage/sci-chemistry/openbabel-2.1.1 of [ 3017M ] ...
[A[146C  [34;01m[ [32;01mok[34;01m ][0m
 [33;01m*[0m Please remember that ccache data dir is outside the newly mounted
 [33;01m*[0m portage temporary directory, to preserve the spool between merges.
>>> Unpacking source...
>>> Unpacking openbabel-2.1.1.tar.gz to /var/tmp/portage/sci-chemistry/openbabel-2.1.1/work
>>> Source unpacked.
>>> Compiling source in /var/tmp/portage/sci-chemistry/openbabel-2.1.1/work/openbabel-2.1.1 ...
 * econf: updating openbabel-2.1.1/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openbabel-2.1.1/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking auto silent in maintainer mode... auto-sleep-9
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for a BSD-compatible install... /usr/bin/install -c
checking for doxygen... no
checking for swig... /usr/bin/swig
checking for perl... /usr/bin/perl
checking for prove... /usr/bin/prove
checking for python... /usr/bin/python
checking for ruby... /usr/bin/ruby
checking wxWidgets version... not found
configure: WARNING: Cannot find doxygen to build documentation.
	Have a look at http://www.doxygen.org/
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
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checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-cf77... no
checking for x86_64-pc-linux-gnu-fort77... no
checking for x86_64-pc-linux-gnu-fl32... no
checking for x86_64-pc-linux-gnu-af77... no
checking for x86_64-pc-linux-gnu-xlf90... no
checking for x86_64-pc-linux-gnu-f90... no
checking for x86_64-pc-linux-gnu-pgf90... no
checking for x86_64-pc-linux-gnu-pghpf... no
checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking for dlopen... no
checking for dlopen in -ldl... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether byte ordering is bigendian... no
checking for asin in -lm... yes
checking for dlopen in -lc... no
checking for dlopen in -ldl... (cached) yes
checking for xml2-config... /usr/bin/xml2-config
checking for libxml - version >= 2.6.5... yes (version 2.6.30)
checking for GetINCHI in -linchi... no
checking if zlib is wanted... checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking conio.h usability... no
checking conio.h presence... no
checking for conio.h... no
checking for string.h... (cached) yes
checking strstream.h usability... no
checking strstream.h presence... no
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checking iostream.h usability... yes
checking iostream.h presence... yes
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checking fstream.h usability... yes
checking fstream.h presence... yes
checking for fstream.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking iostream usability... yes
checking iostream presence... yes
checking for iostream... yes
checking fstream usability... yes
checking fstream presence... yes
checking for fstream... yes
checking sstream usability... yes
checking sstream presence... yes
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checking strstream usability... yes
checking strstream presence... yes
checking for strstream... yes
checking whether time.h and sys/time.h may both be included... yes
checking for clock_t... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for rint... yes
checking for sranddev... no
checking for snprintf... yes
checking for strncasecmp... yes
checking whether scandir needs a const cast... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating data/Makefile
config.status: creating src/Makefile
config.status: creating src/math/Makefile
config.status: creating src/formats/Makefile
config.status: creating src/fingerprints/Makefile
config.status: creating src/formats/xml/Makefile
config.status: creating src/formats/inchi/Makefile
config.status: creating src/forcefields/Makefile
config.status: creating src/GUI/Makefile
config.status: creating include/Makefile
config.status: creating include/openbabel/Makefile
config.status: creating include/openbabel/math/Makefile
config.status: creating test/Makefile
config.status: creating test/cmltest/Makefile
config.status: creating tools/Makefile
config.status: creating doc/Makefile
config.status: creating scripts/Makefile
config.status: creating openbabel-2.0.pc
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing include/openbabel/babelconfig.h commands
Makefile:152: *** missing separator.  Stop.
 [31;01m*[0m 
 [31;01m*[0m ERROR: sci-chemistry/openbabel-2.1.1 failed.
 [31;01m*[0m Call stack:
 [31;01m*[0m   ebuild.sh, line 1701:  Called dyn_compile
 [31;01m*[0m   ebuild.sh, line 1039:  Called qa_call 'src_compile'
 [31;01m*[0m   ebuild.sh, line   44:  Called src_compile
 [31;01m*[0m   ebuild.sh, line  711:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   		emake || die "emake failed"
 [31;01m*[0m  The die message:
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant.
 [31;01m*[0m A complete build log is located at '/var/log/portage/sci-chemistry:openbabel-2.1.1:20080118-203342.log'.
 [31;01m*[0m