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Gentoo's Bugzilla – Attachment 141237 Details for
Bug 206574
sci-chemistry/openbabel-2.1.x has loads of automagic dependencies
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emerge log
sci-chemistry:openbabel-2.1.1:20080118-203342.log (text/plain), 11.86 KB, created by
Marco Clocchiatti
on 2008-01-18 20:44:15 UTC
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Description:
emerge log
Filename:
MIME Type:
Creator:
Marco Clocchiatti
Created:
2008-01-18 20:44:15 UTC
Size:
11.86 KB
patch
obsolete
> [32;01m*[0m Determine new optimal TMPFS value: [ 3017M ] > [32;01m*[0m Mounting /var/tmp/portage/sci-chemistry/openbabel-2.1.1 of [ 3017M ] ... >[A[146C [34;01m[ [32;01mok[34;01m ][0m > [33;01m*[0m Please remember that ccache data dir is outside the newly mounted > [33;01m*[0m portage temporary directory, to preserve the spool between merges. >>>> Unpacking source... >>>> Unpacking openbabel-2.1.1.tar.gz to /var/tmp/portage/sci-chemistry/openbabel-2.1.1/work >>>> Source unpacked. >>>> Compiling source in /var/tmp/portage/sci-chemistry/openbabel-2.1.1/work/openbabel-2.1.1 ... > * econf: updating openbabel-2.1.1/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating openbabel-2.1.1/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --build=x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether to enable maintainer-specific portions of Makefiles... no >checking auto silent in maintainer mode... auto-sleep-9 >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for a BSD-compatible install... /usr/bin/install -c >checking for doxygen... no >checking for swig... /usr/bin/swig >checking for perl... /usr/bin/perl >checking for prove... /usr/bin/prove >checking for python... /usr/bin/python >checking for ruby... /usr/bin/ruby >checking wxWidgets version... not found >configure: WARNING: Cannot find doxygen to build documentation. > Have a look at http://www.doxygen.org/ >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognise dependent libraries... pass_all >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for x86_64-pc-linux-gnu-g77... no >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-f77... no >checking for x86_64-pc-linux-gnu-frt... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-cf77... no >checking for x86_64-pc-linux-gnu-fort77... no >checking for x86_64-pc-linux-gnu-fl32... no >checking for x86_64-pc-linux-gnu-af77... no >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-f90... no >checking for x86_64-pc-linux-gnu-pgf90... no >checking for x86_64-pc-linux-gnu-pghpf... no >checking for x86_64-pc-linux-gnu-epcf90... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking for shl_load... no >checking for shl_load in -ldld... no >checking for dlopen... no >checking for dlopen in -ldl... yes >checking whether a program can dlopen itself... yes >checking whether a statically linked program can dlopen itself... no >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether byte ordering is bigendian... no >checking for asin in -lm... yes >checking for dlopen in -lc... no >checking for dlopen in -ldl... (cached) yes >checking for xml2-config... /usr/bin/xml2-config >checking for libxml - version >= 2.6.5... yes (version 2.6.30) >checking for GetINCHI in -linchi... no >checking if zlib is wanted... checking for inflateEnd in -lz... yes >checking zlib.h usability... yes >checking zlib.h presence... yes >checking for zlib.h... yes >checking iconv.h usability... yes >checking iconv.h presence... yes >checking for iconv.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking for stdlib.h... (cached) yes >checking stdio.h usability... yes >checking stdio.h presence... yes >checking for stdio.h... yes >checking conio.h usability... no >checking conio.h presence... no >checking for conio.h... no >checking for string.h... (cached) yes >checking strstream.h usability... no >checking strstream.h presence... no >checking for strstream.h... no >checking iostream.h usability... yes >checking iostream.h presence... yes >checking for iostream.h... yes >checking fstream.h usability... yes >checking fstream.h presence... yes >checking for fstream.h... yes >checking math.h usability... yes >checking math.h presence... yes >checking for math.h... yes >checking time.h usability... yes >checking time.h presence... yes >checking for time.h... yes >checking ctype.h usability... yes >checking ctype.h presence... yes >checking for ctype.h... yes >checking iostream usability... yes >checking iostream presence... yes >checking for iostream... yes >checking fstream usability... yes >checking fstream presence... yes >checking for fstream... yes >checking sstream usability... yes >checking sstream presence... yes >checking for sstream... yes >checking strstream usability... yes >checking strstream presence... yes >checking for strstream... yes >checking whether time.h and sys/time.h may both be included... yes >checking for clock_t... yes >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking for rint... yes >checking for sranddev... no >checking for snprintf... yes >checking for strncasecmp... yes >checking whether scandir needs a const cast... yes >configure: creating ./config.status >config.status: creating Makefile >config.status: creating data/Makefile >config.status: creating src/Makefile >config.status: creating src/math/Makefile >config.status: creating src/formats/Makefile >config.status: creating src/fingerprints/Makefile >config.status: creating src/formats/xml/Makefile >config.status: creating src/formats/inchi/Makefile >config.status: creating src/forcefields/Makefile >config.status: creating src/GUI/Makefile >config.status: creating include/Makefile >config.status: creating include/openbabel/Makefile >config.status: creating include/openbabel/math/Makefile >config.status: creating test/Makefile >config.status: creating test/cmltest/Makefile >config.status: creating tools/Makefile >config.status: creating doc/Makefile >config.status: creating scripts/Makefile >config.status: creating openbabel-2.0.pc >config.status: creating src/config.h >config.status: executing depfiles commands >config.status: executing include/openbabel/babelconfig.h commands >Makefile:152: *** missing separator. Stop. > [31;01m*[0m > [31;01m*[0m ERROR: sci-chemistry/openbabel-2.1.1 failed. > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 1701: Called dyn_compile > [31;01m*[0m ebuild.sh, line 1039: Called qa_call 'src_compile' > [31;01m*[0m ebuild.sh, line 44: Called src_compile > [31;01m*[0m ebuild.sh, line 711: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake || die "emake failed" > [31;01m*[0m The die message: > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant. > [31;01m*[0m A complete build log is located at '/var/log/portage/sci-chemistry:openbabel-2.1.1:20080118-203342.log'. > [31;01m*[0m
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bug 206574
: 141237