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Bug 938217

Summary: sci-biology/ucsc-genome-browser-260-r2 - [ncurses-6.5] [gcc-15] mafClick.c: internal compiler error: in factor_out_conditional_operation, at tree-ssa-phiopt.cc:407
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: RESOLVED FIXED    
Severity: normal CC: toolchain
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 932474    
Attachments: emerge-info.txt
emerge-history.txt.xz
environment
etc.clang.tar.xz
etc.portage.tar.xz
logs.tar.xz
qlist-info.txt.xz
sci-biology:ucsc-genome-browser-260-r2:20240819-235602.log.xz
temp.tar.xz

Description Toralf Förster gentoo-dev 2024-08-20 07:23:07 UTC
      |                       ^~~~~~~
mafClick.c:1007:28: warning: variable chrom set but not used [-Wunused-but-set-variable]
 1007 |         char dbOnly[128], *chrom;
      |                            ^~~~~
during GIMPLE pass: phiopt
mafClick.c: In function mafPrettyOut:
mafClick.c:1313:1: internal compiler error: in factor_out_conditional_operation, at tree-ssa-phiopt.cc:407
 1313 | }
      | ^

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_hardened_systemd-20240816-062001

  UNMASKED:
    Please re-assign to toolchain@ if you get a test failure in C, C++, or Fortran code which makes no sense.
  <sys-devel/gcc-15.0.9999:15
    Requested by sam
  >=sys-libs/ncurses-6.5

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-15 *
clang/llvm (if any):
clang version 18.1.8
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.8
Python 3.12.5
Available Ruby profiles:
  [1]   ruby31 (with Rubygems)
  [2]   ruby32 (with Rubygems)
  [3]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.80.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.12_p7 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.4_p7 [openjdk-bin-21]
3)	Eclipse Temurin JDK 8.422_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
  [1]   php8.2
  [2]   php8.3 *
go version go1.23.0 linux/amd64

  HEAD of ::gentoo
commit 28375b804f476f6eb9c75bc79dee57c340739142
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Mon Aug 19 22:18:56 2024 +0000

    2024-08-19 22:18:56 UTC

emerge -qpvO =sci-biology/ucsc-genome-browser-260-r2
[ebuild  N    ] sci-biology/ucsc-genome-browser-260-r2  USE="mysql server -static-libs -vhosts"
Comment 1 Toralf Förster gentoo-dev 2024-08-20 07:23:08 UTC
Created attachment 900748 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-08-20 07:23:09 UTC
Created attachment 900749 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2024-08-20 07:23:10 UTC
Created attachment 900750 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-08-20 07:23:11 UTC
Created attachment 900751 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-08-20 07:23:12 UTC
Created attachment 900752 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-08-20 07:23:13 UTC
Created attachment 900753 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-08-20 07:23:14 UTC
Created attachment 900754 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-08-20 07:23:15 UTC
Created attachment 900755 [details]
sci-biology:ucsc-genome-browser-260-r2:20240819-235602.log.xz
Comment 9 Toralf Förster gentoo-dev 2024-08-20 07:23:16 UTC
Created attachment 900756 [details]
temp.tar.xz
Comment 10 Larry the Git Cow gentoo-dev 2024-09-01 22:48:19 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=54523fc8f19638fc2606a97d11db956af42e70d3

commit 54523fc8f19638fc2606a97d11db956af42e70d3
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-09-01 22:47:45 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-09-01 22:47:45 +0000

    sys-devel/gcc: add 15.0.0_pre20240901
    
    Closes: https://bugs.gentoo.org/938217
    Closes: https://bugs.gentoo.org/938226
    Closes: https://bugs.gentoo.org/938247
    Closes: https://bugs.gentoo.org/938250
    Closes: https://bugs.gentoo.org/938611
    Signed-off-by: Sam James <sam@gentoo.org>

 sys-devel/gcc/Manifest                      |  2 ++
 sys-devel/gcc/gcc-15.0.0_pre20240901.ebuild | 52 +++++++++++++++++++++++++++++
 2 files changed, 54 insertions(+)