| Summary: | sci-chemistry/autodock_vina-1.2.5 - [ncurses-6.5] ../.../split.cpp: fatal error: .../convenience.hpp: No such file or directory | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Chemistry-Related Packages <sci-chemistry> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 930498 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt.xz environment etc.clang.tar.xz etc.portage.tar.xz qlist-info.txt.xz sci-chemistry:autodock_vina-1.2.5:20240519-201956.log |
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Created attachment 893424 [details]
emerge-info.txt
Created attachment 893425 [details]
emerge-history.txt.xz
Created attachment 893426 [details]
environment
Created attachment 893427 [details]
etc.clang.tar.xz
Created attachment 893428 [details]
etc.portage.tar.xz
Created attachment 893429 [details]
qlist-info.txt.xz
Created attachment 893430 [details]
sci-chemistry:autodock_vina-1.2.5:20240519-201956.log
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e7ea26f08a0d2a9b4c4f4c385a8c2488c073387c commit e7ea26f08a0d2a9b4c4f4c385a8c2488c073387c Author: Sam James <sam@gentoo.org> AuthorDate: 2024-07-12 20:17:28 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2024-07-12 20:17:28 +0000 sci-chemistry/autodock_vina: fix build w/ boost-1.85 Closes: https://bugs.gentoo.org/932237 Signed-off-by: Sam James <sam@gentoo.org> .../autodock_vina/autodock_vina-1.2.5.ebuild | 1 + .../files/autodock_vina-1.2.5-boost-1.85.patch | 21 +++++++++++++++++++++ 2 files changed, 22 insertions(+) |
too long lines were shrinked: fatal: not a git repository (or any parent up to mount point /var/tmp) Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -I ../../../src/lib -o split.o -c ../../../src/split/split.cpp x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -o szv_grid.o -c ../../../src/lib/szv_grid.cpp x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -o conf_independent.o -c ../../../src/lib/conf_independent.cpp x86_64-pc-linux-gnu-g++ -pthread -ansi -Wno-long-long -DNDEBUG -I /usr//include -O2 -pipe -march=native -fno-diagnostics-color -DBOOST_FILESYSTEM_VERSION=3 -DBOOST_TIMER_ENABLE_DEPRECATED -std=c++14 -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp ../../../src/split/split.cpp:33:10: fatal error: boost/filesystem/convenience.hpp: No such file or directory 33 | #include <boost/filesystem/convenience.hpp> // filesystem::basename | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_desktop_plasma-20240507-035004 UNMASKED: >=sys-libs/ncurses-6.5 Issues involving opaque types / incomplete typedefs should block bug 930805 The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle" gcc-config -l: [1] x86_64-pc-linux-gnu-14 * clang/llvm (if any): clang version 18.1.5 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/18/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/18 18.1.5 Python 3.11.9 Available Ruby profiles: [1] ruby31 (with Rubygems) [2] ruby32 (with Rubygems) [3] ruby33 (with Rubygems) * Available Rust versions: [1] rust-bin-1.77.1 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.23_p9 [openjdk-bin-11] 2) Eclipse Temurin JDK 17.0.11_p9 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.3_p9 [openjdk-bin-21] 4) Eclipse Temurin JDK 8.412_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 [4] openjdk-bin-21 system-vm php cli (if any): go version go1.22.3 linux/amd64 HEAD of ::gentoo commit 8d6a420530f405ac3521db2a02228a347f6c89b5 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sun May 19 19:48:57 2024 +0000 2024-05-19 19:48:56 UTC emerge -qpvO sci-chemistry/autodock_vina