Summary: | sci-chemistry/pymol-3.0.0 does not enable tests | ||
---|---|---|---|
Product: | Gentoo Linux | Reporter: | Agostino Sarubbo <ago> |
Component: | Current packages | Assignee: | Gentoo Chemistry-Related Packages <sci-chemistry> |
Status: | CONFIRMED --- | ||
Severity: | normal | ||
Priority: | Normal | ||
Version: | unspecified | ||
Hardware: | All | ||
OS: | Linux | ||
Whiteboard: | |||
Package list: | Runtime testing required: | --- | |
Bug Depends on: | |||
Bug Blocks: | 784263 | ||
Attachments: | build.log.xz |
Description
Agostino Sarubbo
2024-05-18 06:29:43 UTC
Created attachment 893194 [details]
build.log.xz
build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)
It seems upstream removed the script for running them: https://salsa.debian.org/debichem-team/pymol/-/blob/master/debian/rules?ref_type=heads#L22 The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5a1dfcc8986e29f5157bc9f706aaeb23307c4b68 commit 5a1dfcc8986e29f5157bc9f706aaeb23307c4b68 Author: Pacho Ramos <pacho@gentoo.org> AuthorDate: 2024-09-28 14:42:14 +0000 Commit: Pacho Ramos <pacho@gentoo.org> CommitDate: 2024-09-28 14:50:45 +0000 sci-chemistry/pymol: Multiple bugfixes Upstream fixes for multiple bugs, also fixing python 3.12 and numpy2 compat, and fixing LTO building. Format-security patch looks to not be needed anymore (at least I couldn't reproduce the problem). If the problem reappears, please report the bug to upstream to follow its progress properly. Use icon from the pymol tarball and update desktop file. Update ebuild to try to run the tests, but keep them restricted for now as they keep failing. Bug: https://bugs.gentoo.org/932127 Signed-off-by: Pacho Ramos <pacho@gentoo.org> .../pymol-3.0.0-SceneGetDrawFlag-indexing.patch | 22 +++ .../pymol/files/pymol-3.0.0-distutils-py3.12.patch | 70 ++++++++ .../pymol/files/pymol-3.0.0-eof-maeffplugin.patch | 22 +++ .../files/pymol-3.0.0-lto-molfile-plugin.patch | 187 +++++++++++++++++++++ sci-chemistry/pymol/files/pymol-3.0.0-numpy2.patch | 35 ++++ .../pymol/files/pymol-3.0.0-py3.12-progress.patch | 26 +++ sci-chemistry/pymol/pymol-3.0.0-r1.ebuild | 123 ++++++++++++++ 7 files changed, 485 insertions(+) |