Bug 927976

Summary:	sci-biology/emboss-6.6.0-r2 - file collision with dev-texlive/texlive-latexextra-2023_p69752-r2
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal	CC:	aballier, tex
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt sci-biology:emboss-6.6.0-r2:20240327-095328.log.xz

Description Toralf Förster gentoo-dev

2024-03-27 17:27:22 UTC

 * Press Ctrl-C to Stop
 * 
 * dev-texlive/texlive-latexextra-2023_p69752-r2:0::gentoo
 * 	/usr/bin/wordcount
 * 
 * Package 'sci-biology/emboss-6.6.0-r2' NOT merged due to file

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_gnome-20240326-012242

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 18.1.2
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.2
Python 3.11.8
Available Ruby profiles:
  [1]   ruby31 (with Rubygems)
  [2]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.76.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 21.0.2_p13 [openjdk-bin-21]
*)	Eclipse Temurin JDK 8.402_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm
  [2]   openjdk-bin-21 

php cli (if any):

  HEAD of ::gentoo
commit eaa8baf96624ac5e4d6b9b78f884545d78664d4f
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Mar 27 04:19:03 2024 +0000

    2024-03-27 04:19:02 UTC

emerge -qpvO sci-biology/emboss
[ebuild  N    ] sci-biology/emboss-6.6.0-r2  USE="X pdf png -minimal -mysql -postgres"

Comment 1 Toralf Förster gentoo-dev

2024-03-27 17:27:23 UTC

Created attachment 888806 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2024-03-27 17:27:24 UTC

Created attachment 888807 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2024-03-27 17:27:25 UTC

Created attachment 888808 [details]
etc.clang.tar.xz

Comment 4 Toralf Förster gentoo-dev

2024-03-27 17:27:26 UTC

Created attachment 888809 [details]
etc.portage.tar.xz

Comment 5 Toralf Förster gentoo-dev

2024-03-27 17:27:27 UTC

Created attachment 888810 [details]
logs.tar.xz

Comment 6 Toralf Förster gentoo-dev

2024-03-27 17:27:28 UTC

Created attachment 888811 [details]
qlist-info.txt

Comment 7 Toralf Förster gentoo-dev

2024-03-27 17:27:29 UTC

Created attachment 888812 [details]
sci-biology:emboss-6.6.0-r2:20240327-095328.log.xz

Comment 8 Larry the Git Cow gentoo-dev

2024-03-30 19:36:51 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=92cb387a0aa19b2cf594e25dcfa91a60f85c57e9

commit 92cb387a0aa19b2cf594e25dcfa91a60f85c57e9
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-03-30 19:36:42 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-03-30 19:36:42 +0000

    sci-biology/emboss: avoid file collision with dev-texlive/texlive-latexextra
    
    Closes: https://bugs.gentoo.org/927976
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/emboss/{emboss-6.6.0-r2.ebuild => emboss-6.6.0-r3.ebuild} | 3 +++
 1 file changed, 3 insertions(+)