Bug 927868

Summary:	sci-biology/gmap-2020.10.27 fails to compile: genome128_hr.c:3782:12: error: implicit declaration of function _mm256_extract_epi64 [-Wimplicit-function-declaration]
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	870412
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2024-03-26 08:32:10 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/gmap-2020.10.27 fails to compile.
Discovered on: x86 (internal ref: tinderbox_x86)
System: GCC-14-SYSTEM (https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#GCC-14)

Info about the issue:
https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#CF0002

Comment 1 Agostino Sarubbo gentoo-dev

2024-03-26 08:32:11 UTC

Created attachment 888632 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2024-03-26 08:32:13 UTC

Error(s) that match a know pattern in addition to what has been reported in the summary:


checking for MAP_FAILED in mmap... yes
genome128_hr.c:3782:12: error: implicit declaration of function ‘_mm256_extract_epi64’; did you mean ‘_mm256_extract_epi8’? [-Wimplicit-function-declaration[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wimplicit-function-declaration]]