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Bug 922901

Summary: dev-python/tables-3.9.2 - /.../b2nd.h: fatal error: blosc-private.h: No such file or directory
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Python Gentoo Team <python>
Status: CONFIRMED ---    
Severity: normal CC: sci
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: emerge-info.txt
dev-python:tables-3.9.2:20240124-235134.log
emerge-history.txt.xz
environment
etc.clang.tar.xz
etc.portage.tar.xz
qlist-info.txt.xz
temp.tar.xz

Description Toralf Förster gentoo-dev 2024-01-25 12:34:54 UTC
too long lines were shrinked:

2024-01-24 23:51:51,847 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/sr
2024-01-24 23:51:51,847 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/sr
2024-01-24 23:51:52,530 root INFO x86_64-pc-linux-gnu-gcc -shared -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG /var/tmp/portage/dev-python/tables-3.9.2/work/tables-3.9.2-python3_11/build/
2024-01-24 23:51:52,576 root INFO building 'tables._comp_bzip2' extension
2024-01-24 23:51:52,576 root INFO x86_64-pc-linux-gnu-gcc -Wsign-compare -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -Wno-error=incompatible-pointer-types -DNDEBUG -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -DHAVE_BLOSC2_LIB=1 -Ihdf5-blosc/src -Ihdf5-blosc2/sr
In file included from hdf5-blosc2/src/blosc2_filter.c:18:
/usr/include/b2nd.h:30:10: fatal error: blosc-private.h: No such file or directory
   30 | #include "blosc-private.h"
      |          ^~~~~~~~~~~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib_systemd-20240118-002005

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6
Python 3.11.7
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.74.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.20.1_p1 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
4)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17 
  [4]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.21.6 linux/amd64

  HEAD of ::gentoo
commit 0060c8e0ebbc2a968aff13749e806525cca4f72d
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Jan 24 21:03:20 2024 +0000

    2024-01-24 21:03:19 UTC

emerge -qpvO dev-python/tables
[ebuild  N    ] dev-python/tables-3.9.2  USE="cpudetection examples -debug -test" PYTHON_TARGETS="python3_11 -python3_10 -python3_12"
Comment 1 Toralf Förster gentoo-dev 2024-01-25 12:34:55 UTC
Created attachment 883102 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-01-25 12:34:56 UTC
Created attachment 883103 [details]
dev-python:tables-3.9.2:20240124-235134.log
Comment 3 Toralf Förster gentoo-dev 2024-01-25 12:34:57 UTC
Created attachment 883104 [details]
emerge-history.txt.xz
Comment 4 Toralf Förster gentoo-dev 2024-01-25 12:34:58 UTC
Created attachment 883105 [details]
environment
Comment 5 Toralf Förster gentoo-dev 2024-01-25 12:34:59 UTC
Created attachment 883106 [details]
etc.clang.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-01-25 12:35:00 UTC
Created attachment 883107 [details]
etc.portage.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-01-25 12:35:01 UTC
Created attachment 883108 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-01-25 12:35:03 UTC
Created attachment 883109 [details]
temp.tar.xz